AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00353 ATGACGGCGAACGGCGTTAAGATGGCGGTAACATCTCAGGCATACTTAGACGGATCTCACGTCAAACAAACTAAATCACTCATCACTGAGTTATGCCGTCTCTTTTACACCTTAGGTTGGGTTTCCGGCACCGGTGGAAGCATCACCGCCAAAGTCCACGACGATTCCGTCCCCAAATCCGACCAACTCATTATTATGTCTCCTTCCGGTGTGCAAAAGGAACGTATGGTGGAAGAAGATATGTATGTATTGTCGTCTAATGGTGATATATTGTTTTCACCATTGCCAAAAGCTTACCCTAACAAACCTCCTAAATGTTCTGACTGTGCTCCTCTTTTTATGAAGGCTTATGATAAGCGAAATGCTGGTGCGGTAATTCATAGTCATGGAATGGAATCATGTCTTGTGACAATGCTTGATCCTTTGGCAAAAGAGTTTAGGATTACTCATATGGAGATGATTAAAGGGATTCAAGGGCATGGTTATTATGACGAGCTTGTGGTTCCCATTATAGAAAACTCTGCTCATGAGAGAGATTTGACAGAAGCTCTTGCTGCCGCGATTGACGCTTACCCGAAAACAACTGCTGTGCTGGTCCGAAACCATGGTATTTATGTTTGGGGTGATTCTTGGATTAGTGCCAAAACTCAGGCTGAATGCTACCACTATCTCTTCGAAGCTGCAATCAAACTTCATCAATTAGGCATGGACTGGTCAACTCCAAGTCATGGTCCCATTCAAAGGTCCAAACCACATCTAGGTGGCCAAACTACAGAAACACCATTCAAGCGTTGTATTGTTCTAGACATTGAAGGGACAACAACACCTATATCCTTTGTAACTGACATTCTTTTCCCGTATGCCCGTGACAATGTAAGAAGGCACTTGGAAGAAACATATGATACTGATGCTACTCAAAATGACATTAAGTTGTTGCGATCTCAAGTACAAGATGACTTACAAAATGGAGTTGCTAGTGCTGTTCTAATTCCATCCGATGAGGCGGGTAAACAGGAGGTGATAGCTGCTCTAGTTGCTAATGTTGAAGGAATGATAAAGTCCGACAGGAAAATTACTTCTTTAAAGCAGTTACAAGGTCACATATGGTGCACTGGATTTGAGAAAAATGAACTTAAAGGAGTCGTTTTTGATGATGTCCCTGGCTCTCTTGAAAAGTGGCATGCTTCTGGTGTAAAAGTGTATATATATTCAAGTGGTAGCAGATTAGCACAGAGGCTCTTATTTGGATATACCGATCATGGGGATTTAAGGAACTACTTGTGTGGATTTTTTGACACCACAGTGGGGAACAAAAAAGAAACAAAGAGTTATGTTCAAATTTCGGAATCACTTGGAGTTCATAAGCCATCAGAAATCCTATTTGTAACCGATATCTTTCAAGAAGCTGTTGCTGCAAAGGCAGCCGGGTTGGAGGTGGTGATCTCTGTTCGGCCTGGAAACGGACCACTTCCCGAGAATCACGGTTTCAGGACAGTCAAGTCTTTTTCTGAGATATGA 1518 42.42 MTANGVKMAVTSQAYLDGSHVKQTKSLITELCRLFYTLGWVSGTGGSITAKVHDDSVPKSDQLIIMSPSGVQKERMVEEDMYVLSSNGDILFSPLPKAYPNKPPKCSDCAPLFMKAYDKRNAGAVIHSHGMESCLVTMLDPLAKEFRITHMEMIKGIQGHGYYDELVVPIIENSAHERDLTEALAAAIDAYPKTTAVLVRNHGIYVWGDSWISAKTQAECYHYLFEAAIKLHQLGMDWSTPSHGPIQRSKPHLGGQTTETPFKRCIVLDIEGTTTPISFVTDILFPYARDNVRRHLEETYDTDATQNDIKLLRSQVQDDLQNGVASAVLIPSDEAGKQEVIAALVANVEGMIKSDRKITSLKQLQGHIWCTGFEKNELKGVVFDDVPGSLEKWHASGVKVYIYSSGSRLAQRLLFGYTDHGDLRNYLCGFFDTTVGNKKETKSYVQISESLGVHKPSEILFVTDIFQEAVAAKAAGLEVVISVRPGNGPLPENHGFRTVKSFSEI 505
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00353 505 Gene3D - 20 245 IPR036409 -
Lomi1g00353 505 SFLD enolase-phosphatase 264 504 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Lomi1g00353 505 SFLD Haloacid Dehalogenase 264 504 - -
Lomi1g00353 505 Pfam Class II Aldolase and Adducin N-terminal domain 28 228 IPR001303 -
Lomi1g00353 505 NCBIfam methylthioribulose 1-phosphate dehydratase 28 234 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Lomi1g00353 505 SUPERFAMILY HAD-like 264 505 IPR036412 -
Lomi1g00353 505 CDD HAD-EP 265 486 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Lomi1g00353 505 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1. 13 505 IPR027505 -
Lomi1g00353 505 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 21 246 - -
Lomi1g00353 505 Gene3D - 373 505 IPR023214 -
Lomi1g00353 505 Gene3D - 277 372 - -
Lomi1g00353 505 SUPERFAMILY AraD-HMP-PK domain-like 22 242 IPR036409 -
Lomi1g00353 505 Pfam haloacid dehalogenase-like hydrolase 264 476 - -
Lomi1g00353 505 PANTHER ENOLASE-PHOSPHATASE E1 263 505 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Lomi1g00353 505 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 277 373 - -
Lomi1g00353 505 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 373 505 - -
Lomi1g00353 505 NCBIfam acireductone synthase 264 503 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Lomi1g00353 505 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 13 237 IPR027514 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Lomi1g00353 505 SMART Aldolase-II-2 26 229 IPR001303 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00353 K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]
Lomi1g00353 K09880 enolase-phosphatase E1 [EC:3.1.3.77]
Lomi1g00353 K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
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Event-related genes

Select Gene_1 Gene_2 Event_name
121241 Lomi1g00353 Lomi5g02062
324115 Lomi2g04306 Lomi1g00353
333362 Lomi1g00353 Lomi2g04306
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:3120472 Lomi1g00354 Lomi-Chr1:3129850 tandem
Lomi Lomi-Chr1:3120472 Lomi2g04306 Lomi-Chr2:48484722 wgd
Lomi Lomi-Chr1:3120472 Lomi5g02062 Lomi-Chr5:31469177 wgd