AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi1g00363 | ATGGGTGGTGATGGGTTAAGGTCAGCTAGGTTTGATGACTTGCCTTTACATTTGATTCTTGAAATCTTGACATCTGGGGGTGGACTGGGTGGTGCGGATCTTGTGTGTTTGGAGCTAAGTAATAAACTTTTTAGAGGTAATCATGGATTGGTTTCTCAAAAGTCAAAGTCTTTGGTTGACTTTGCTGCTTTTCAAATTTGTGGGTCACATCCTGTTTATATGTGTTTGAATCCTAGAGCTAGAGATGAGCTTGTGGGTAGATGTGGTGGAAATTGGAAACGAGTTTTGAGGTTCTTACAATCAGTCAACCAGTCTTCAGATGTTGTTCAAACCTCTTCAGGCAATATGCAAATTAGGAGTGGAAGGTATCACACAATATTGATAAAAGACTCAACGGTTTACTCGTGTGGTTCGAGTTTGTGTGGTGTTCTTGGTCATGGTCCCGAAACAACACAATGTGTAGCATTTACACCAATTAAGTTTCCGTATCCCGCTCATGTGACACACGTTTCTGCCTCACATAATCATGCTGCCTTTGTCATGAAGTCTGGAGAGGTCTTCACATGTGGTGACAATTCATCTTTCTGCTGTGGGCATAGTGATACTAACCGTTCAATATTCAAGCCTCGGCTTGTTGAAGCATTAAAGGAAGTCACTTGCAAGCAGGTTGCTACTGGGGTTAGCTTTACCGTATTTCTAACAGATGAAGGTCAAGTATACACATGTGGGACCAACACTAATGGTCAACTAGGCCATGGTGACACCTTGGATAGACCAACACCTAAACTTGTGGAATCGCTTGTGAATGTCGGTCCTGTTGTACATATTGCTGCTGGTCCAAGTTATGCACTTGCTGTCACTAGTGATGGAACCGTTTATTCATTTGGGTCTGGAACCAATTTCTGTCTTGGCCATGGTGAGCAGCACAGTGAACTCAGACCTAGACCACTCTTGTGGTTCAGGAGAAAAGGCATCCACGTGATTCGCGTCTCTGCTGGTGATGAACATGTGGTTGCTCTGGATTCTAACGGATATGTTTACACATGGGGAAAAGGCTACTGTGGTGCACTTGGTCATGGAGATGAAATCGATAAAACTACCCCCGAGTTCCTGATTAGCCTCAAGAATCACCTAGCTGTTCAGGTGTGTGCAAGCAAGAGGAAGACCTTTGTGTTGGTAGATAATGGAAGTATGTATGGATTTGGATGGATGGGATTTGGGAGTCTTGGTTTCCCAGATAAAGGTGTATCTGATAAAGTGTTGAAGCCAAGCAAGCTTTACAGTTTAAAGGATCATCATATTTCTCAAGTAAGCACAGGTTTATATCACTCGGTTGTGGTCACAAATCGAGGTCTTATCTTTGGTTTTGGAGACAATGAACGAGCACAACTTGGGCACGATAAGGTGAGAGATTGTCGCAACCCGACTGAAATCTTGGTTGAAGAAGCAAGTGATGTTGGTGCATTGCATGTATGA | 1476 | 43.29 | MGGDGLRSARFDDLPLHLILEILTSGGGLGGADLVCLELSNKLFRGNHGLVSQKSKSLVDFAAFQICGSHPVYMCLNPRARDELVGRCGGNWKRVLRFLQSVNQSSDVVQTSSGNMQIRSGRYHTILIKDSTVYSCGSSLCGVLGHGPETTQCVAFTPIKFPYPAHVTHVSASHNHAAFVMKSGEVFTCGDNSSFCCGHSDTNRSIFKPRLVEALKEVTCKQVATGVSFTVFLTDEGQVYTCGTNTNGQLGHGDTLDRPTPKLVESLVNVGPVVHIAAGPSYALAVTSDGTVYSFGSGTNFCLGHGEQHSELRPRPLLWFRRKGIHVIRVSAGDEHVVALDSNGYVYTWGKGYCGALGHGDEIDKTTPEFLISLKNHLAVQVCASKRKTFVLVDNGSMYGFGWMGFGSLGFPDKGVSDKVLKPSKLYSLKDHHISQVSTGLYHSVVVTNRGLIFGFGDNERAQLGHDKVRDCRNPTEILVEEASDVGALHV | 491 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi1g00363 | 491 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 116 | 413 | IPR051210 | - | |
| Lomi1g00363 | 491 | SUPERFAMILY | RCC1-BLIP-II | 112 | 413 | IPR009091 | - | |
| Lomi1g00363 | 491 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 344 | 395 | IPR000408 | - | |
| Lomi1g00363 | 491 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 289 | 340 | IPR000408 | - | |
| Lomi1g00363 | 491 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 132 | 180 | IPR000408 | - | |
| Lomi1g00363 | 491 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 395 | 447 | IPR000408 | - | |
| Lomi1g00363 | 491 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 343 | 392 | IPR000408 | - | |
| Lomi1g00363 | 491 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 236 | 286 | IPR000408 | - | |
| Lomi1g00363 | 491 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 183 | 233 | IPR000408 | - | |
| Lomi1g00363 | 491 | Gene3D | - | 86 | 317 | IPR009091 | - | |
| Lomi1g00363 | 491 | Gene3D | - | 318 | 489 | IPR009091 | - | |
| Lomi1g00363 | 491 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 290 | 343 | IPR000408 | - | |
| Lomi1g00363 | 491 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 237 | 289 | IPR000408 | - | |
| Lomi1g00363 | 491 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 184 | 236 | IPR000408 | - | |
| Lomi1g00363 | 491 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 396 | 450 | IPR000408 | - | |
| Lomi1g00363 | 491 | PRINTS | Chromosome condensation regulator RCC1 signature | 132 | 148 | IPR000408 | - | |
| Lomi1g00363 | 491 | PRINTS | Chromosome condensation regulator RCC1 signature | 446 | 467 | IPR000408 | - | |
| Lomi1g00363 | 491 | PRINTS | Chromosome condensation regulator RCC1 signature | 276 | 292 | IPR000408 | - | |
| Lomi1g00363 | 491 | PRINTS | Chromosome condensation regulator RCC1 signature | 292 | 306 | IPR000408 | - | |
| Lomi1g00363 | 491 | PRINTS | Chromosome condensation regulator RCC1 signature | 385 | 403 | IPR000408 | - | |
| Lomi1g00363 | 491 | PRINTS | Chromosome condensation regulator RCC1 signature | 186 | 202 | IPR000408 | - | |
| Lomi1g00363 | 491 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 437 | 447 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi1g00363 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 324120 | Lomi2g04298 | Lomi1g00363 | |
| 333357 | Lomi1g00363 | Lomi2g04298 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:3218289 | Lomi8g02429 | Lomi-Chr8:33852585 | dispersed | |
| Lomi | Lomi-Chr1:3218289 | Lomi2g04298 | Lomi-Chr2:48406269 | wgd |