AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00373 ATGACTCATAAAGAGGAGACTCTGATTGGTTCGGGAACACTTGTAGCGATTACGGTTATCTTATCATTGAAGTTGTTTAATGATCATGTTAATAATTGGAAGAGACCCAAGGAGCAAAAGGCCATCTTAGTGATTATTTGTATGGCACCAATTTATGCTATTGATTCATATGTTGGACTGCTTGATATTCGTGGCAGTGAGACATTTTTCGTGTTGTTGGATTCGATCAAAGAATGCTACGAGGGTCTGGTGATGGCTAAGTTCTTGGCTTTGTTGTACACTTATTTGAATATATCGATAAGCAAAAACATAGTCCCGGATGAGATCAAAGGAAGAGAAATCCATCACTCGTTTCCCATGACTCTCTTCCAACCTCATTCAGTTCGCTTGAACCATCAAAACCTGAAGCTCCTTAAGTACTGGACATGGCAGTTTGTAGTGATTCGCCCTGTGTGTTCTGTCTTGATGATAGTTCTACAACTCCTTGAGATATATCCTGATTGGCTTAGCTGGACATTCACTATGATCTTGAATGTATCCGTTTCATTGGCATTATACGCTCTTGTGGTTTTCTACCATGTGTTTGCTAAAGAATTAGCACCACATAAGCCTCTTGCCAAATTCTTATGTGTCAAGGGGATCGTCTTCTTCTGCTTTTGGCAGGGAATTGTACTCAGTGGTCTCGTGGCAGTGGGTGTAATTAAATCAAATCATTTTTGGCTTGATGTGTCACATATCCAACAAGCGCTGCAAAACGCGCTGGTGATAGTGGAGATGGTGTTTTTTGCCATCTTTCAGATGTATGCATACACTGCTGCACCATACAAGGTGGCTGATGTGAAAGAAAAGAAGAAAGAGTGA 861 40.77 MTHKEETLIGSGTLVAITVILSLKLFNDHVNNWKRPKEQKAILVIICMAPIYAIDSYVGLLDIRGSETFFVLLDSIKECYEGLVMAKFLALLYTYLNISISKNIVPDEIKGREIHHSFPMTLFQPHSVRLNHQNLKLLKYWTWQFVVIRPVCSVLMIVLQLLEIYPDWLSWTFTMILNVSVSLALYALVVFYHVFAKELAPHKPLAKFLCVKGIVFFCFWQGIVLSGLVAVGVIKSNHFWLDVSHIQQALQNALVIVEMVFFAIFQMYAYTAAPYKVADVKEKKKE 286
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00373 286 Pfam Organic solute transporter Ostalpha 8 275 IPR005178 -
Lomi1g00373 286 SMART Solute-trans-a-2 7 275 IPR005178 -
Lomi1g00373 286 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 8 279 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00373 K14360 organic solute transporter subunit alpha
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Event-related genes

Select Gene_1 Gene_2 Event_name
324125 Lomi2g04284 Lomi1g00373
333352 Lomi1g00373 Lomi2g04284
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr13:10943393 Lomi1g00373 Lomi-Chr1:3346869 dispersed
Lomi Lomi-Chr14:7505672 Lomi1g00373 Lomi-Chr1:3346869 dispersed
Lomi Lomi-Chr1:3346869 Lomi3g01987 Lomi-Chr3:17170245 dispersed
Lomi Lomi-Chr1:3346869 Lomi2g04284 Lomi-Chr2:48296549 wgd