AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00380 ATGGCAACTACAAAGACTTCAATTTTGATCGTTTTGGCGACAATTGCAGTTTGTAGCGCAATCACACAAGTGAGAGCTTATTCAAGCTCTTACTGTGGTCCTTGGTCGCGTTGCGCAGGGAAAACCCTTTATTGCCCTTCCCAGTGCCCCTCGAGTGTCACAAACGAACCCAAAGCTAAAGTTTGTCGTATCGATTGCTATTCTCCTAAATGCAAACCTGAATGCAGAAACCCTAAAGCAAACTGCGATACCCCGGGATCCGCATGCTACGACCCACGGTTGATTGGGGGAGACGGCATTGTGTTCTACTTTCACGGCCAGGTTAACGAGCATTTCAGCTTAATCTCCGACTCTAACCTTCAAATCAACGGTCGATTCATCGGCCACAGACCCGTGGGCCGATCCAGGGACTTCACATGGATCCAAGCCTTGGGTCTCCTCTTCAACTCCCACACTTTCTCATTAGAAGCCACCAAATCGGCGACATGGGACAACGAAATAGACCACCTAAAATTCTCATACGATAACGAAGAAATCTCCCTACCCATTGGTGGTTTCTCCTCGTGGAAGTCATCAGACGAATCAGTTATAATCGAGAGAACATCTTCGGTTAATAGTGTGATGGTGACCGTACAAGGAGTCGTAGAGATTTTGGCAAATGTGGTCCCGGTGACTGCAGAAGATGACAAAATCCATGGCTACAAAGTGCCTTCTGATGATTGTTTTGCACATTTGGAAGTTCAATTTAGGTTTGTTGGACTTTCGGACGAGGTTGAAGGGGTGTTGGGAAGGACTTATCAGCCAGATTTCAAGAATCCGGCTAAACCAGGAGTTGCGATGGCGGTTGTGGGAGGTGAAGATAAGTACAAAACAAGTTCATTGCTCGTGGCTGATTGTGCAAGTTGTATATTTGATTCTAGTAATGTTGTAAAGAGGGAGAATGAGGTGATGGAGAATAGTGCATTGGATTGTTCTGCTAAAGGATTGTTTCATGGCAATGGGATTGTTTGCAAGAAATGA 1020 45.69 MATTKTSILIVLATIAVCSAITQVRAYSSSYCGPWSRCAGKTLYCPSQCPSSVTNEPKAKVCRIDCYSPKCKPECRNPKANCDTPGSACYDPRLIGGDGIVFYFHGQVNEHFSLISDSNLQINGRFIGHRPVGRSRDFTWIQALGLLFNSHTFSLEATKSATWDNEIDHLKFSYDNEEISLPIGGFSSWKSSDESVIIERTSSVNSVMVTVQGVVEILANVVPVTAEDDKIHGYKVPSDDCFAHLEVQFRFVGLSDEVEGVLGRTYQPDFKNPAKPGVAMAVVGGEDKYKTSSLLVADCASCIFDSSNVVKRENEVMENSALDCSAKGLFHGNGIVCKK 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00380 339 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 28 339 - -
Lomi1g00380 339 Pfam Root cap 248 304 IPR009646 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00380 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr10:26692266 Lomi1g00380 Lomi-Chr1:3382008 dispersed
Lomi Lomi-Chr1:3382008 Lomi1g02810 Lomi-Chr1:40174473 dispersed
Lomi Lomi-Chr1:3382008 Lomi2g01551 Lomi-Chr2:14529931 transposed