AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi1g00401 | ATGGCCGGTAGAGGCAAAACCCTAGGATCCGGTGTGGCGAAGAAAGCCACTTCACGAAGCAGTAAAGCCGGCCTTCAGTTTCCCGTCGGTCGTATCGCTCGTTTTCTTAAAGCCGGAAAGTACGCCGAACGTGTTGGTGCCGGTGCTCCGGTGTATCTTGCCGCCGTTCTTGAATACCTTGCCGCTGAGGTGCTTGAATTGGCTGGCAATGCTGCAAGAGACAACAAGAAAACTAGAATTGTTCCAAGACACATTCAATTAGCGGTCAGAAACGATGAGGAATTAAGCAAGCTTCTTGGTGATGTCACAATTGCTAATGGTGGTGTTATGCCTAACATCCACAACCTCCTTCTACCCAAGAAAGCTGCTGGTTCTTCAAAGGCATCTGTTGATGAAGATTAG | 402 | 48.76 | MAGRGKTLGSGVAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAAGSSKASVDED | 133 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi1g00401 | 133 | PRINTS | Histone H2A signature | 73 | 87 | IPR002119 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0030527(InterPro) | |
| Lomi1g00401 | 133 | PRINTS | Histone H2A signature | 101 | 119 | IPR002119 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0030527(InterPro) | |
| Lomi1g00401 | 133 | PRINTS | Histone H2A signature | 59 | 72 | IPR002119 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0030527(InterPro) | |
| Lomi1g00401 | 133 | PRINTS | Histone H2A signature | 15 | 37 | IPR002119 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0030527(InterPro) | |
| Lomi1g00401 | 133 | PRINTS | Histone H2A signature | 44 | 59 | IPR002119 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0030527(InterPro) | |
| Lomi1g00401 | 133 | ProSitePatterns | Histone H2A signature. | 23 | 29 | IPR032458 | - | |
| Lomi1g00401 | 133 | PANTHER | HISTONE H2A | 13 | 122 | IPR002119 | GO:0000786(InterPro)|GO:0000790(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0006342(PANTHER)|GO:0030527(InterPro) | |
| Lomi1g00401 | 133 | Pfam | Core histone H2A-H2B-H3-H4 | 14 | 90 | IPR007125 | GO:0003677(InterPro) | |
| Lomi1g00401 | 133 | CDD | H2A | 9 | 121 | IPR002119 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0030527(InterPro) | |
| Lomi1g00401 | 133 | Pfam | C-terminus of histone H2A | 93 | 127 | IPR032454 | - | |
| Lomi1g00401 | 133 | Gene3D | Histone, subunit A | 1 | 129 | IPR009072 | GO:0046982(InterPro) | |
| Lomi1g00401 | 133 | SUPERFAMILY | Histone-fold | 17 | 121 | IPR009072 | GO:0046982(InterPro) | |
| Lomi1g00401 | 133 | FunFam | Histone H2A | 1 | 129 | - | - | |
| Lomi1g00401 | 133 | SMART | h2a4 | 4 | 124 | IPR002119 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0030527(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi1g00401 | K11251 | histone H2A |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:3630247 | Lomi5g02002 | Lomi-Chr5:31045335 | dispersed | |
| Lomi | Lomi-Chr1:3630247 | Lomi11g01881 | Lomi-Chr11:27205238 | wgd | |
| Lomi | Lomi-Chr1:3630247 | Lomi2g04261 | Lomi-Chr2:47982342 | wgd | |
| Lomi | Lomi-Chr1:3630247 | Lomi5g02001 | Lomi-Chr5:31043002 | wgd | |
| Lomi | Lomi-Chr1:3630247 | Lomi6g00334 | Lomi-Chr6:3749781 | wgd | |
| Lomi | Lomi-Chr1:3630247 | Lomi7g00273 | Lomi-Chr7:2695896 | wgd |