Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00423	ATGGCTGCTGCTTTTTCATCCACAATCCCAGCCCCAAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCATTTCTAAAACACTTCCTTTCTTCACAGTCACCCCTTCTTCAATTCAAGAAAACCGGACCCAAACCGTTGACCGTTTCTTGTGTTATTGCTAAACCGTCACCGGTTCAAATGGGATCGGTTCAGGATGAATCGTCGGTCCTTCAACGACCGGATTCGCTTGGCCGGTTTGGTAAGTATGGTGGGAAGTATGTACCTGAAACCCTAATGTATGCTCTTACCGAACTTGAATCTGCTTTCAAAGCCCTTGCTACTGACCATGAATTCCAGAAGGAATTAGATGGGATATTGAAGGATTATGTTGGTAGGGAAAGCCCTCTCTATTTTGCTGAACGACTTACAGAGCATTATAAACGTCCTAATGGTGAAGGGCCCAAAATATATCTTAAGAGAGAAGATCTTAACCATACTGGTGCGCATAAGATCAATAACGCGGTTGCACAAGCTTTGCTAGCCAAGAAGTTAGGGAAAGAGAGAATCATTGCAGAAACTGGTGCCGGGCAGCATGGAGTTGCAACTGCCACTGTATGTGCACGATTTGGGTTGAAATGTATTATTTATATGGGTGCTCAAGATATGGAACGACAAGCTCTTAATGTGTTCAGAATGAAACTCCTTGGAGCAGAGGTTAGAGCAGTTCATTCGGGGACAGCCACACTAAAGGATGCTACATCAGAGGCCATAAGGGACTGGGTGACCAACGTGGAAACAACCCATTACATTTTGGGTTCTGTTGCGGGCCCACACCCCTACCCAATGATGGTACGCGATTTCCATGCAGTAATTGGTAAAGAAACAAGAAAGCAAGCATTGGAAAAATGGGGAGGAAAACCAGATGTGTTGGTTGCTTGTGTTGGTGGAGGGTCAAATGCTATGGGCCTGTTTCATGAGTTTGTTGATGACAAAGAAGTTAGATTGATTGGAGTTGAGGCTGCGGGTTTTGGTCTTGACAGTGGAAAACATGCAGCAACGTTAACAAAAGGAGAGGTTGGTGTGTTGCATGGAGCCATGAGCTATTTGTTACAGGATGATGATGGTCAAATTATTGAGCCTCACTCCATTAGCGCAGGGCTGGACTACCCAGGAGTTGGACCAGAGCACAGCTTTCTGAAAGATTTAGGCCGGGCTGAATATCATAGCATTACTGATGAGGAAGCGTTGGAAGCTTTTAAGAGACTGTCGAGATTAGAGGGTATAATCCCAGCTCTGGAAACATCTCATGCACTCGCTTATCTGGAGAAGCTATGTCCCACACTACCTAATGACACCAAGGTTGTGCTTAACTGCAGTGGTAGAGGGGACAAAGATGTTCATACTGCTATCAAGTATTTGCAGGTTTAA	1434	44.56	MAAAFSSTIPAPNSSSSSSSSSSSSSSSSSSPFLKHFLSSQSPLLQFKKTGPKPLTVSCVIAKPSPVQMGSVQDESSVLQRPDSLGRFGKYGGKYVPETLMYALTELESAFKALATDHEFQKELDGILKDYVGRESPLYFAERLTEHYKRPNGEGPKIYLKREDLNHTGAHKINNAVAQALLAKKLGKERIIAETGAGQHGVATATVCARFGLKCIIYMGAQDMERQALNVFRMKLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKEVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDLGRAEYHSITDEEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLPNDTKVVLNCSGRGDKDVHTAIKYLQV	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00423	477	PIRSF	Trp-syn-beta	71	477	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Lomi1g00423	477	MobiDBLite	consensus disorder prediction	1	34	-	-
	Lomi1g00423	477	Pfam	Pyridoxal-phosphate dependent enzyme	134	462	IPR001926	-
	Lomi1g00423	477	NCBIfam	tryptophan synthase subunit beta	86	474	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Lomi1g00423	477	SUPERFAMILY	Tryptophan synthase beta subunit-like PLP-dependent enzymes	82	475	IPR036052	-
	Lomi1g00423	477	PANTHER	TRYPTOPHAN SYNTHASE-RELATED	73	476	IPR023026	GO:0000162(PANTHER)\|GO:0000162(InterPro)\|GO:0004834(PANTHER)\|GO:0004834(InterPro)\|GO:0005737(PANTHER)\|GO:0009570(PANTHER)
	Lomi1g00423	477	Gene3D	-	133	468	IPR036052	-
	Lomi1g00423	477	Hamap	Tryptophan synthase beta chain [trpB].	81	475	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Lomi1g00423	477	FunFam	Tryptophan synthase beta chain	138	287	-	-
	Lomi1g00423	477	CDD	Trp-synth-B	103	470	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Lomi1g00423	477	FunFam	Tryptophan synthase beta chain	288	468	-	-
	Lomi1g00423	477	ProSitePatterns	Tryptophan synthase beta chain pyridoxal-phosphate attachment site.	165	179	IPR006653	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Lomi1g00423	477	Gene3D	-	88	290	IPR036052	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00423	K01696	tryptophan synthase beta chain [EC:4.2.1.20]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	118678	Lomi11g01873	Lomi1g00423
	121264	Lomi1g00423	Lomi5g01987
	324147	Lomi2g04232	Lomi1g00423
	333330	Lomi1g00423	Lomi2g04232

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	3849640	Lomi	Lomi1g00423	Lomi-Chr1:3818799	Lomi11g01873	Lomi-Chr11:27132982
	3854299	Lomi	Lomi1g00423	Lomi-Chr1:3818799	Lomi2g04232	Lomi-Chr2:47751768
	3854570	Lomi	Lomi1g00423	Lomi-Chr1:3818799	Lomi2g01856	Lomi-Chr2:17190437
	3856933	Lomi	Lomi1g00423	Lomi-Chr1:3818799	Lomi5g01987	Lomi-Chr5:30960223