AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00424 ATGGCTGGCTATACTTTGTTCAAAGCTTTTGGACGGCCCATTATCTTGAGACCAATGGCTTGGTTTTTCTTATCGCAGGTGACCATTCCAAACCTCTCAACAGTTATGTTCTACTACCAGACAGAAGTTTTAAATTTAGAAGCTTCTTTTCTTGGCACATCAGGCGTTATTGGGTGGATGGGCCTCATGCTTGGAACCTTCACTTACAACCGCTACTTAAAGAAGATGAAGTTAAGAAAGATTCTCATGTTTGCTCATGTTACTCTGTCAATATTAACTCTTCTAGACGCAGTTTTGGTTGCTAGACAAAGTGTGTTGTTTGGCATATCGGATGAATTAATGGTGTTGATTGGGTCTGCCCTCTCGTACGCAGTTAATCAATTCAAGTTCATGCCATTTCTAATCTTATCAGGACAACTCTGCCCATCTGGAATAGAAGGGACTCTTTTCGCACTCTTCATGTCCATAAACAACTTTGGGTCCACAATGAGTTCATTTGTTGGTGCTAATTTGGCTTCGGTCCTAGACATCTCTTCGGGTTCTTTTGAAAATCTTTGTTTTGGGATTGGAATTCAAGTCATTTGCACATTTATACCAGTTGCTTTCCTGTTTTTGATCCCAAAGGATGCCACAGGGATATCAACATATACTGATAGCTATACATACATATATCGGTAG 678 40.12 MAGYTLFKAFGRPIILRPMAWFFLSQVTIPNLSTVMFYYQTEVLNLEASFLGTSGVIGWMGLMLGTFTYNRYLKKMKLRKILMFAHVTLSILTLLDAVLVARQSVLFGISDELMVLIGSALSYAVNQFKFMPFLILSGQLCPSGIEGTLFALFMSINNFGSTMSSFVGANLASVLDISSGSFENLCFGIGIQVICTFIPVAFLFLIPKDATGISTYTDSYTYIYR 225
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00424 225 Gene3D MFS general substrate transporter like domains 4 211 IPR036259 -
Lomi1g00424 225 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 5 211 IPR039309 -
Lomi1g00424 225 Pfam BT1 family 6 210 IPR039309 -
Lomi1g00424 225 SUPERFAMILY MFS general substrate transporter 5 207 IPR036259 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00424 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
324148 Lomi2g04228 Lomi1g00424
333329 Lomi1g00424 Lomi2g04228
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3821801 Lomi Lomi1g00424 Lomi-Chr1:3829395 Lomi3g02410 Lomi-Chr3:22905634
3854300 Lomi Lomi1g00424 Lomi-Chr1:3829395 Lomi2g04228 Lomi-Chr2:47731721