AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00430 ATGGATGAAGTGAAGAGTATGGGTTCACAAGTGGCGATTGAGGTTGAATGGCCGGCGAATAAAGTTAGAGATAGTTTTATGAAGTTTTTTGAAGAAAGGAATCATGTGTATTGGAAATCAAGTCCTGTTGTTCCTGTTAATGATCCCACACTTCTGTTTGCTAATGCTGGTATGAATCAGTTCAAGCCTATCTTTCTGGGTACTGCTGATCCTAACACTTCATTGAGCAAACTGACCCGTGCCTGCAACACACAGAAGTGTATCCGAGCTGGTGGGAAGCATAATGATCTTGATGATGTTGGCAAAGACACTTATCATCACACCTTCTTTGAGATGCTTGGTAACTGGTCATTTGGTGATTATTTTAAAGAGGAAGCCATTGGATGGGCATGGGAGCTTCTCACAAGGGTATTTAAGCTACCTACTGATCGGATTTATGCTACTTATTTTGGCGGTGATGAGAAATTGGGCCTTCCTGCTGATGATGAAGCTAGAAATATATGGCTCAAATATCTTCCACCTGCACGAGTTTTGCCTTTTGGCTGTAAAGACAACTTCTGGGAGATGGGTGATACTGGGCCATGTGGACCGTGTACTGAAATACACTTTGATAGAATTGGTGGTCGCGATGGTGCAGATTTGGTTAACAATGATGACCCTACATTGATCGAAATATGGAATAATGTTTTTATTCAGTTTAACAGGGAAGCTGATGGTTCCTTGAAACCTTTACCTGCCAAACACGTGGATACTGGTATGGGTTTCGAAAGATTGACTTCAATTCTTCAGAACAAGATGAGCAACTATGATACTGATGTCTTCGTACCTATCTTTGATGCGATCCAGCATTCAACTGGCGCTAGACCATATACAGGCAAAGTGGGTCCAGATGATGTTGACGGAATTGACATGGCGTACAGAGTTGTTGCTGACCACGTTAGAACTCTCTCATTTGCCATTGCAGATGGTTCACGTCCAGGCAATGAAGGGCGTGAATATGTTCTTCGTCGTATTCTTCGCCGTGCTGTACGTTATGGAACTGAAGTACTGAAAGCACAGCAAGGATTTTTCAATGGATTGGTAAAAGTTGTGGTGGATTCAATGGGGCATGTTTTTCCTGAGCTAAAACAACAAGAGGCAAACATTAGAGAGATTATAGCTGAAGAGGAAGCAAGTTTTGGGAGGACATTACTTCATGGAATCGAGAAGTTTAAGAGGACAGTTCAAGATGTTCAGGGGAAGAAATTTAGTGGACAGGATGCATTTGTGTTGTGGGATACTTTTGGATTTCCATTGGATCTGACACAGCTGATGGCAGAAGAAAGGGGATTAGAGGTTGATGTTGATGGATTCAATATTGCTATGAATGAAGCTAGAGAAAGATCGAGGAATGCTCAGAATAAGCAAGCTGCTGTGGCAATTGTCATGGATGCAGATGCGACTTCAGCACTGCGTAAAAGAGGGGTCCCTACAACGAATGATAGTTATAAGTTTGAATGGTTTAAGGAGCATGAAAGTGAGATAAAAGCCATTTACACAGGCAACGAGTACGTGGAATGTGCTGATGCTGGTGTTGATGTTGGTATAATTCTTAAGAGCACCAGTTTTTATGCTGAGCAAGGTGGTCAGATATTTGATACTGGACTACTTGAAGGCTCCTTTGGATCATTTGAAGTTTGTAATGTTCAAGTTTATGGTGGTTTTGTGATACATCTTGGTAAAATTACTGGGGAGTCTGCCAAGTTTCATGTGGATGATAAAGTAATTTGCAAGGTTGACTATGAAAGGCGTCAACGCATTGCTCCCAATCATACCTGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGACTCATGTCGATCAGAAAGGATCCATTGTTCTTCCAGAAAAATTAAGATTTGACTTCTCCCATGGGAAACCCGTAAAACCAGAGGACCTCCGTAGAATTGAATCCATTGTGAACAAACAAATCACAGCTGAATTAGATGTTTCTGCAAAGGAGGCGAGCCTGGCCGATGCTAAGCGAGTTAATGGTTTACGGGCAGTTTTTGGTGAAGTGTATCCTGATCCAGTTCGGATTGTTGCAATTGGTCGACAAGTGGACGATCTTTTGGCTGATCCTGAAAATGAAGAATGGGTGTCCATATCTGCAGAGCTATGTGGAGGGACTCATATTTCAAATACACGAGAGGCGAAGGCTTTTGCGCTATTGTCTGAGGAGGGAATTGCCAAGGGGATTCGAAGAGTTACTGCTGTAACAACAGATTATGCTTTTGAGGCTATTAAAAAGGCAGCTGAACTCGAGCAGGAAGTTGATCAGGCATCGAAGCTGGAAGGAAGCCTTCTTGAACAGAAAGTGACCTCTTTAAATGGTCAAGTAGAGTCTGCCTCTATTCCGTCAGCAAAGAAGTCTGATTTAAAGGCGAAAATCTCTATTCTTCAGAATTTAGTAATAAAAGCAAAAAAGAAGACTGCTGAAGAGAACATTCACAAAGCTGTTGAAGCTGCAATTAAGGCAGCAGAAGTTGCTTCTTCTGAAGGGGTACCCTTCTGCATTTCACATGTTGCTGTAGGATCCGATACTGCTGCTATTCGTGAAGCAGTTGTGAAAGTCATGGAACAGAAGGGAATAGCGGTGATGGTTTTTAGCACAGATGAACAATTGAAGAAGGCCTTAGTGTGTGCTGGTGTGCCGGAAAAAAGTGATAAAAGCAACCAGTTGAAGGTTTTAGAGTGGCTGAAGGTGGCGTTGAAGCCACTGGAAGGCAAAGGTGGTGGAGGGAAGGGCGGTCTTGCTCAAGGCCAGGGACCTGATATAAAGCATGTAGATGAAGCAATAGACGTTGCCAAGTCATTTGCAGCACTCAAACTAGGCTGA 2886 42.69 MDEVKSMGSQVAIEVEWPANKVRDSFMKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTRVFKLPTDRIYATYFGGDEKLGLPADDEARNIWLKYLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDGADLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFVPIFDAIQHSTGARPYTGKVGPDDVDGIDMAYRVVADHVRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDSMGHVFPELKQQEANIREIIAEEEASFGRTLLHGIEKFKRTVQDVQGKKFSGQDAFVLWDTFGFPLDLTQLMAEERGLEVDVDGFNIAMNEARERSRNAQNKQAAVAIVMDADATSALRKRGVPTTNDSYKFEWFKEHESEIKAIYTGNEYVECADAGVDVGIILKSTSFYAEQGGQIFDTGLLEGSFGSFEVCNVQVYGGFVIHLGKITGESAKFHVDDKVICKVDYERRQRIAPNHTCTHMLNFALREVLGTHVDQKGSIVLPEKLRFDFSHGKPVKPEDLRRIESIVNKQITAELDVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRQVDDLLADPENEEWVSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIKKAAELEQEVDQASKLEGSLLEQKVTSLNGQVESASIPSAKKSDLKAKISILQNLVIKAKKKTAEENIHKAVEAAIKAAEVASSEGVPFCISHVAVGSDTAAIREAVVKVMEQKGIAVMVFSTDEQLKKALVCAGVPEKSDKSNQLKVLEWLKVALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG 961
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00430 961 Coils Coil 806 826 - -
Lomi1g00430 961 Hamap Alanine--tRNA ligase [alaS]. 1 960 IPR023033 GO:0004813(InterPro)
Lomi1g00430 961 Gene3D Bira Bifunctional Protein; Domain 2 18 266 IPR045864 -
Lomi1g00430 961 Pfam DHHA1 domain 822 955 IPR003156 GO:0003676(InterPro)
Lomi1g00430 961 PRINTS Alanyl-tRNA synthetase signature 223 234 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi1g00430 961 PRINTS Alanyl-tRNA synthetase signature 331 344 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi1g00430 961 PRINTS Alanyl-tRNA synthetase signature 95 106 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi1g00430 961 PRINTS Alanyl-tRNA synthetase signature 250 263 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi1g00430 961 PRINTS Alanyl-tRNA synthetase signature 307 323 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi1g00430 961 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 694 752 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Lomi1g00430 961 FunFam Alanine--tRNA ligase 491 591 - -
Lomi1g00430 961 CDD AlaRS-core 19 265 - -
Lomi1g00430 961 Coils Coil 448 468 - -
Lomi1g00430 961 SUPERFAMILY Class II aaRS and biotin synthetases 18 269 IPR045864 -
Lomi1g00430 961 SUPERFAMILY ThrRS-AlaRS common domain 592 764 IPR018163 GO:0000166(InterPro)
Lomi1g00430 961 Gene3D - 484 592 - -
Lomi1g00430 961 SMART tRNA-SAD-4 694 753 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Lomi1g00430 961 FunFam Alanine--tRNA ligase, cytoplasmic 16 266 - -
Lomi1g00430 961 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 17 766 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Lomi1g00430 961 FunFam Alanine--tRNA ligase, cytoplasmic 593 768 - -
Lomi1g00430 961 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 270 471 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Lomi1g00430 961 Gene3D - 847 956 - -
Lomi1g00430 961 Pfam tRNA synthetases class II (A) 21 596 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Lomi1g00430 961 NCBIfam alanine--tRNA ligase 21 939 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi1g00430 961 PANTHER ALANYL-TRNA SYNTHETASE 14 957 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Lomi1g00430 961 SUPERFAMILY Translation proteins 523 592 IPR009000 -
Lomi1g00430 961 Gene3D - 593 769 - -
Lomi1g00430 961 Coils Coil 760 787 - -
Lomi1g00430 961 FunFam Alanine--tRNA ligase 848 956 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00430 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
324154 Lomi2g04217 Lomi1g00430
333323 Lomi1g00430 Lomi2g04217
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3821804 Lomi Lomi1g00430 Lomi-Chr1:3893170 Lomi2g00028 Lomi-Chr2:279036
3854306 Lomi Lomi1g00430 Lomi-Chr1:3893170 Lomi2g04217 Lomi-Chr2:47659684