AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00439 ATGAGTATTGAAATTATTGGGAGGCACGCGCTACTCTTCGACGATGATACCAACGCCGCTTTCATAAACTCCGACGACGCACTTGTTGAATGGAATTCGCTGCTAATCGACCGTTACGACGTCCGTCATCTCCTTTCTAGCCCTCCGCCGTCTCGACGGCGGCGCAATCCGCAAACGTCTCACTCATCTTCCGCCGATGCGGAAATCGATTATGAAAGATATCTCGATCTCCCCTCACCTTCCGACGAACAAGAAGAAGATGCGAAACCAGAATCTGTGGGTGGATTTAATGCTGTTCCTTTTTCTTATGGAAACTATGAGGATTTTAATGATATAAAGATCGCTGAGGCTCAATCAGAAATCTCTGGATTTCAACCCTCCTTTCCTCTCCCTGACAGCCTGGTTCAAAACTTGCCTCCTACAGAGAAGGTACATCAGATTATTGCAAGGACTGCTCTTTTTGTCGGCAAAAATGGAGGGCAATCTGAGATTGTTTTGAGGGTGAAGCAAGGAGACAACCCAACCTTTGGGTTCTTAATGCCTGACCATCACCTACATCCGTACTTTAGGTTTCTGGTTGATCACCAAAATCTTCTGCAGTCGAAAGACGATGGACAGCCTGATAAAGAGAAAACATCCACTACTGAGAATGCTTCAGGAGCTGGAGCATTGTCGTTGCTTGGTTCTGTATATGGCACTGGTGAAGATGAGGATGGGGGAGTGGAACACGTGTCATCATGTGGAGAATATGTATCCGGGAAAACTATAGATGTAGATGCCACCAACTCTTATGCACCAGGAAAAACCATCTTGACAACTAGCAAAGATGAACCTGTATCTAAGCGTTCACTTCCATCCAAGGAAGATGCCCCTGTTCAAAAAAGGAGTCCTTCATTAAATGCATTGAAAGCTAAACGAACTAGTAGTATGAGAAAAGGTGAGTCCTTGGGTTCACTTTCCTCTGTTCCAGATAAATTGCGGGCTTCTTCTCTTCCTCCAATTCCCGAGACTGAGCAAATGGTACTGGATCCTCCATCTGACATGAAACGGTTGGTTGACAAGATAGTAGAGTTCATCATCAAGAATGGGAGGCAGTTTGAGGCTGTACTTATGGAACAAGATCGTGGTCATGGAAGATTCCCGTTCCTACTCCCATCTAATATATTCCATCCTTACTATCTAAAAGTTCTCCAGCAAGCACAGGAGCCGAAGTTAACTGTCAAGAGTTTCCACAATGAGAAGGAAGATTTCAGAGGACATATTCTGAACAGGAAAAGGTCTATCTCAAAGGAGAATGAGAATAAAAGGGTGGAATCTGATGATATACCACTTGATTCTGAAAGGAAAGAGAAGTTTAAGATGGTAATTAACAACACTGATAAGGAAGGTTCAGAAGCGCCAGCTAAAGTCACACAATCCCAACTTGGAATTCAGGTGGATGCTGCTCAGGCAGCAGCTATTCTTCAGGCTGCTACGAGAGGAATCAAACTTCCAAATTTAGGAATTTTGTCTGGGCAACCCTCTAATGAAGCTGAATCCTCTGAAGCCCGACAAATGACTCATGAACAGAAATTGAAGGCAGAGAGGCTAAAACGGGCCAAGATGTTCGTGGCTCAGCTGAAAAGTGGAGCCGTTCCATCAAAAGGTGAACCCCTACGTGGCTTATCTGCCGAGCCACAAGGATCAGGAGCTGACAACCACCTTGCAGCCAAAGAAAGAGAGAGGAGCACAACCCCTTTAAATTATGACACTGCAGACAAGAAATTAAAATCCGAAAAGGAACATTTGAATGAAGAAAGGTGGTCAAAGAGGAAATACCGAGCTAGAACGGAAACACCAGAAGCGCTTGAAGATGATGAAGAAGATGATGAGGAGGTTGATCAGAGAGAAGGAAAAAGGTCGCATAGACACCACACGAAGAAGCACCGATCTCGTAATCGTTCAGTTGAAGTTGACAGTGAAGAAAAAGATGATGAAGAAAGAGATTATAAGCATGTAAAGAGAAGGCATCAATCTCATCTTACTTCACATAAACATGATGAGATGGACAAAAGCAATGAAGAAAGGCATCATAAGTCATCAAGAAGGAAGAAGCATCGATCTCCTAGTTCTTATGAGGAAGATGATCACGAAAGTGACCATGAATATTCCAGAAAGATGCACCGTTCACACCATTCTTCACATGAAGAGTCTGATGATGAAGTTGACAGAGACCACAAACATTCTAAAAAAAAACACAAATATAGATCTCACAGGACTTCTCATCACAGTAGAGATAAGCATCGGAAAAGTCACTCTTCTAAGCATAAACAGAAGCTTGATGTCTCTTCAGAAGAGGGGCAGAGGGATCATAGTAAGGCTGATAGGCATAAAAAGGGATTGAACTCTGATAGAGAAGAACTGGAAGAAGGGGAGATCAGCTCAAAATCGTCGGGTCAGTCGAGAGGGCAACAGCTGGTTGATGGTGCTAGTAAAAAACCTTCCATGGATTTTTCAAGTTCTCATCAAAGTAGGAGATCTCCAAGTCAGCCCATTGAGACCACTGAGGTTCCTGATGACCTCAGGGCCAAAATCAGAGCAATGTTGATGTCCACAATGTAA 2601 43.68 MSIEIIGRHALLFDDDTNAAFINSDDALVEWNSLLIDRYDVRHLLSSPPPSRRRRNPQTSHSSSADAEIDYERYLDLPSPSDEQEEDAKPESVGGFNAVPFSYGNYEDFNDIKIAEAQSEISGFQPSFPLPDSLVQNLPPTEKVHQIIARTALFVGKNGGQSEIVLRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQNLLQSKDDGQPDKEKTSTTENASGAGALSLLGSVYGTGEDEDGGVEHVSSCGEYVSGKTIDVDATNSYAPGKTILTTSKDEPVSKRSLPSKEDAPVQKRSPSLNALKAKRTSSMRKGESLGSLSSVPDKLRASSLPPIPETEQMVLDPPSDMKRLVDKIVEFIIKNGRQFEAVLMEQDRGHGRFPFLLPSNIFHPYYLKVLQQAQEPKLTVKSFHNEKEDFRGHILNRKRSISKENENKRVESDDIPLDSERKEKFKMVINNTDKEGSEAPAKVTQSQLGIQVDAAQAAAILQAATRGIKLPNLGILSGQPSNEAESSEARQMTHEQKLKAERLKRAKMFVAQLKSGAVPSKGEPLRGLSAEPQGSGADNHLAAKERERSTTPLNYDTADKKLKSEKEHLNEERWSKRKYRARTETPEALEDDEEDDEEVDQREGKRSHRHHTKKHRSRNRSVEVDSEEKDDEERDYKHVKRRHQSHLTSHKHDEMDKSNEERHHKSSRRKKHRSPSSYEEDDHESDHEYSRKMHRSHHSSHEESDDEVDRDHKHSKKKHKYRSHRTSHHSRDKHRKSHSSKHKQKLDVSSEEGQRDHSKADRHKKGLNSDREELEEGEISSKSSGQSRGQQLVDGASKKPSMDFSSSHQSRRSPSQPIETTEVPDDLRAKIRAMLMSTM 866
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00439 866 SUPERFAMILY Surp module (SWAP domain) 129 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi1g00439 866 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 705 IPR040397 GO:0000395(PANTHER)
Lomi1g00439 866 MobiDBLite consensus disorder prediction 51 65 - -
Lomi1g00439 866 SMART surpneu2 349 402 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi1g00439 866 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi1g00439 866 Pfam Surp module 349 399 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi1g00439 866 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi1g00439 866 Pfam Alternative splicing regulator 3 87 IPR019147 -
Lomi1g00439 866 MobiDBLite consensus disorder prediction 741 769 - -
Lomi1g00439 866 MobiDBLite consensus disorder prediction 541 854 - -
Lomi1g00439 866 SUPERFAMILY Surp module (SWAP domain) 326 400 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi1g00439 866 MobiDBLite consensus disorder prediction 770 806 - -
Lomi1g00439 866 MobiDBLite consensus disorder prediction 300 316 - -
Lomi1g00439 866 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi1g00439 866 SMART DRY-EERY-2 1 107 IPR019147 -
Lomi1g00439 866 MobiDBLite consensus disorder prediction 700 740 - -
Lomi1g00439 866 MobiDBLite consensus disorder prediction 675 690 - -
Lomi1g00439 866 MobiDBLite consensus disorder prediction 200 220 - -
Lomi1g00439 866 MobiDBLite consensus disorder prediction 567 614 - -
Lomi1g00439 866 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi1g00439 866 MobiDBLite consensus disorder prediction 807 847 - -
Lomi1g00439 866 MobiDBLite consensus disorder prediction 645 666 - -
Lomi1g00439 866 ProSiteProfiles SURP motif repeat profile. 351 393 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi1g00439 866 Gene3D Surp module 336 404 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi1g00439 866 MobiDBLite consensus disorder prediction 266 331 - -
Lomi1g00439 866 MobiDBLite consensus disorder prediction 46 71 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00439 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
324161 Lomi2g04205 Lomi1g00439
333316 Lomi1g00439 Lomi2g04205
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:4011707 Lomi2g04205 Lomi-Chr2:47551519 wgd