AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00445 ATGCATTCCGAGAGCGGTTTCTGGAGGCCAAAGCCTGATGGAACTATTGAGGTTGTCATTGCTCAAAGTACTGGTCTTGTTGAAGTTCAGAAAGGAACATATGATGCAGAAAAGAAAGTTGTGAAGCTTCAAAGTGAGCTTGTTGGAAATGCTTCTAAGGTTAAAGAGATCTCTCGAGTTTTTAATATGGTTGATAACGAGCTATCTTATGCGGTTGAGATGGCTACCAATCTCACCAGTCGTCAGCCTCATCTGAAAGCGTCGCTCAAGAAGCTCTAA 279 42.65 MHSESGFWRPKPDGTIEVVIAQSTGLVEVQKGTYDAEKKVVKLQSELVGNASKVKEISRVFNMVDNELSYAVEMATNLTSRQPHLKASLKKL 92
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00445 92 Gene3D - 1 92 IPR012674 -
Lomi1g00445 92 Pfam THAP4-like, heme-binding beta-barrel domain 1 91 IPR014878 -
Lomi1g00445 92 PANTHER THAP4 PROTEIN 1 92 IPR045165 -
Lomi1g00445 92 SUPERFAMILY Lipocalins 1 91 IPR012674 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00445 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
324166 Lomi2g04199 Lomi1g00445
333311 Lomi1g00445 Lomi2g04199
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:4055001 Lomi2g04199 Lomi-Chr2:47509818 wgd