AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00454 ATGGCCTTTTCATCTCTTCTTAGATCCACCAACCCATCACCTGTTCTTCAATCTTCCCATCAATCTATCTCAGCTCCTATACGCTTGCAGGTGTCATCTGTAAAGGTTCCATCCACTTTTGGTGCTTCAGTTTCTGGGGAATCTTTTTCTTTGCAGAGGTCTAATGCAAGCCGTAACAATTTAATTAAAGCTACTGCCACCCAGACACCAACCAGTGTTCCAAAATCTAGCACCAAAGGGAAGACCAGAGTTGGAATCAATGGTTTTGGAAGAATCGGGAGGTTGGTATTGAGAATAGCTACATTTAGAGATGATATTGAGGTTGTTGCTGTCAACGACCCTTTTATTGATGCCAAGTACATGGCTTACATGTTGAAGTATGATTCTACTCATGGCATATTTAAAGGAACCATCAAGGTTGTTGACGAGACTACTTTGGAAATCAATGGGAAGCAAATAAAAGTTACTAGTCAAAGAGACCCAGCGACAATTCCGTGGGGTGATTTTGGAGCTGATTATGTTGTAGAATCTTCCGGGGTTTTTACAACACTTGATAAGGCCTCGGCACACAAGAAGGGTGGTGCCAAGAAAGTGGTGATCTCTGCTCCATCAGCCGATGCCCCTATGTTTGTGGTAGGAGTAAACGAGACTACATACAGGCCAAGCATGGATATTGTATCCAATGCCAGCTGTACCACTAACTGCTTGGCTCCTTTGGCCAAGGTGGTTCATGAGGAGTTTGGTATTGTTGAAGGTTTGATGACAACTGTTCATGCAACCACAGCTACACAAAAAACTGTTGATGGACCTTCAATGAAGGACTGGCGTGGAGGTCGTGGTGCTGCACAGAACATCATCCCTAGTTCAACTGGTGCTGCCAAGGCTGTAGGGAAGGTGCTACCAGAACTAAATGGAAAACTTACCGGTATGGCCTTCAGAGTCCCAACAGCGAATGTTTCTGTTGTGGATTTAACTTGTCGTCTTGAGAAGAAAGCTTCCTATGAAGATGTTAAAGCTGCAGTGAAGTATGCTTCTGAGGGTCCCCTGCAAGGAATCCTTGGGTACACTGATGAAGATGTTGTCTCCAATGATTTTGTTGGTGATTCCAGATCGAGTATTTTTGATGCAAAAGCGGGAATAGGACTAAGTGCATCTTTTGTGAAGTTGGTGTCGTGGTACGACAATGAGTGGGGTTACAGCAACCGGGTGTTGGACCTGATAGAGCATATGGCGTTGGTGGCAGCTTCCAACTGA 1254 44.66 MAFSSLLRSTNPSPVLQSSHQSISAPIRLQVSSVKVPSTFGASVSGESFSLQRSNASRNNLIKATATQTPTSVPKSSTKGKTRVGINGFGRIGRLVLRIATFRDDIEVVAVNDPFIDAKYMAYMLKYDSTHGIFKGTIKVVDETTLEINGKQIKVTSQRDPATIPWGDFGADYVVESSGVFTTLDKASAHKKGGAKKVVISAPSADAPMFVVGVNETTYRPSMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLEKKASYEDVKAAVKYASEGPLQGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFVKLVSWYDNEWGYSNRVLDLIEHMALVAASN 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00454 417 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 230 393 - -
Lomi1g00454 417 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 247 IPR036291 -
Lomi1g00454 417 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 77 411 IPR020831 GO:0016620(InterPro)
Lomi1g00454 417 FunFam Glyceraldehyde-3-phosphate dehydrogenase 230 395 - -
Lomi1g00454 417 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 83 183 IPR020828 GO:0051287(InterPro)
Lomi1g00454 417 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 229 236 IPR020830 GO:0016620(InterPro)
Lomi1g00454 417 SMART gp-dh-n-7 82 231 IPR020828 GO:0051287(InterPro)
Lomi1g00454 417 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 309 326 IPR020831 GO:0016620(InterPro)
Lomi1g00454 417 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 252 268 IPR020831 GO:0016620(InterPro)
Lomi1g00454 417 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 225 243 IPR020831 GO:0016620(InterPro)
Lomi1g00454 417 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 190 203 IPR020831 GO:0016620(InterPro)
Lomi1g00454 417 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 349 364 IPR020831 GO:0016620(InterPro)
Lomi1g00454 417 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 236 393 IPR020829 GO:0016620(InterPro)
Lomi1g00454 417 Gene3D Dihydrodipicolinate Reductase; domain 2 231 397 - -
Lomi1g00454 417 FunFam Glyceraldehyde-3-phosphate dehydrogenase 82 241 - -
Lomi1g00454 417 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 83 405 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Lomi1g00454 417 Gene3D - 83 410 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00454 K00134 glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
324174 Lomi2g04188 Lomi1g00454
333303 Lomi1g00454 Lomi2g04188
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:4112788 Lomi2g04188 Lomi-Chr2:47447455 dispersed
Lomi Lomi-Chr1:4112788 Lomi1g00455 Lomi-Chr1:4120234 tandem
Lomi Lomi-Chr1:4112788 Lomi2g04187 Lomi-Chr2:47441503 wgd