AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00505 ATGGTAAACAGAAAGGAACGTAGGTTAGCGGCCAAAACTTCTTCTAATCGAAGAGTTAAACTTGATATTTTAGCGGAACCCTCATCTGGAGATTTTGGTGATTCGTCTAACAAAGAAGTTGGAGATGGCGGAAATGCAAATGATGATGCTGGGTCACCCAATTCACCATCTTCTTCAGGTCAAAGGCCGGAAAATCCTCTGTTGCTACTTGGACAATATAGTGATGAAGAAGTGGAGGAAGAATCGGGTAGAGAAATAAACCACGATACTGAAAAGAACTCCTTGGATGAGCTTGATAAGCAGGAAAAGGTAGACAATCACAAGGCTACAGGAAAAGATGAAGAGGAACACCTCACTGCTGACCAAGAGAACAAGGAGCACTCTTCTTCATTGGATGTCTTGCCGATGTTGGAGGAAAATGGTGTTATAGAAGATAATACAGCTGAGTCTCTGCACAGAGACACAGATGCAGTGGAGCAGGCCTCCGTTCCGTGGACATCCGGTACACAGACAACAGGAGATGTGGATTCAGGCTGGAAAATGGTCTTGCATGAGGAGAGTAATTCATATTATTACTGGAACATTGTGACTGGTGAAACTTCTTGGGAAGTTCCTGCTGATCTGACCCAAGGAAATGAATCTGCCCCTAAATCTGCTCCAGGGGTTGAAGAAAATGCAGATATGTATGCTTATGTAGCTACACAACCTAATAACGGATTGACAAACAGTACAGTTTTTGTAGCCACAGAAATCAATGATTCCAAAACCATACTTGAAGTGCATAATGAAAACTATGCAGATGTTGTGGCAAATGATGAAGGCGAGGGTAACCATTATAACACAATAGATGGCGGAAAACCGCCACGTTCAGATGGTGTGAATTATAAATTGTCACATGAGGGGGTTCCAAGATATTCTAATGATGCTTTAAGTAATGAGGAAGCTCACAATACGGATTCTAGTATTCATGATATGAGTTTTCACATACATCAAGGAACAGTTGGCGATCCGTCATCTGATTCTTTCCCTCTCCTACAACTTGGTGAAAATCTTTTAGAAAGATTGAACTTTTTAAAAGGGTCTGAAGGTATTGATGACCGGATATCAAAGTTGAAGTTCGAACTTCATATAAGACTTGCAGACATTAAGTCACTAGTACCTTACGGGTCATCGTTGCTACCCTTTTGGTTGCATTCTGAAAATCAGTTGAAAAAGCTGGAAGCTGCAGTCAACGACGAAGTCCTAAAATATTCTCAATTTGCAAATGTTGGTGAAACAAATGAGCCAGAAAACAAATTACATGAAGGCATACGTGAAGCAACTCCTGGTGCTCTCCCAGACGATTCCACCCCCATGGGATGCCATCATACACTTGCTGATAACATATCCCAATTAGAAACTATAGCATCCCATGAAAAAGGAACTCCAGCAGATACTGTTCCAAATGTGGGCCTCCCCTCTGTAGAAGATGCAGATATGGATGTCGAAATGGAAGTTGAAGGTGAACTAGGAAGGCAAAATGGGGCCGAACAGGATCAGTCTATTCCACTTCTCTCGCACGAGCAAGATGAGTTTGATGGATCAGAAGAAGATATTGACATTCCACATCCGCCTAATGATGAATGGATTCCACCTCCCCCACCACCAGACGAAGAACCTCTACCTCCCCCACCACCAGATGAGCCGCCTGAAGTCCCATATCCACCAACCGCCTCAGAGTTGCAGACAGCACAACCTTACTCTTATGGAGAACAATATAATTTTACGTACCCAGTGTCCGGATATGAATACTATGGTCAAACAAACACAGAACTCCCAAGTGATGGTTATTATGTAGATGCCAATGGATGTGAAGTAGCTCCCCTTCCAGCTGTTTATTATGCAGCAGTGCCGAACCCATATCCTAATGCCACTTCAATAATGAATCATGGAGACTCTGTGACATATTACTCCCTACAAGAAGGGTCAGTACCAAGTGCACCAGGCGTCAGCAGCAGTGTAGAAACGTCTGGTTTATACAAATCTGTCCATGAAAGCATTGCTTCTGATCAAATCCTATCATCTACAGAGGTTCCTCCGATTTCGTCCTCTACTCGTGCTCCAGCAACTTCTCTTGTAGCACGTGATGCATCTGTGGTGTCGGCTCCTGCTGTTACTACTACAGTTACCTCAACAGAACCAGTTCCCAAGGTTCAATCTAAAGTCCCACGCAATAAAAAAAGAACAGTTGCTGCGGTGTCCACTTTGAGGTCCAACAAGAAGGTTTCTGGATTGGTGGATAAGTGGAAGGCTGTTAAAGAGGAGTTGCATGAAGAGGAGGAAGATGAACCTGAAAATGCTTTTGAGGTTTTAGAGAAGAAACGCCAACGGGAGATCGAGCAATGGCATGCTCAGCAGATTGCTACCGGAGAAGCCAAAGACAATGCCAACTTTCAGCCCCTTGGTGGTGATTGGCGAGAGAGGGTTAGGCGGAAGAGGGCTAAAAAATCAACTGAAGTTGCCGAAACTCTAGCAAAGACCATTGATGACACAAATCAACAGCCTGATCTTGTTGAGCTAACAAAACAACTTCCATCGGGTTGGCAGGCATATTGGGATGAAGGATCGAAGCAGGTTTATTATGGGAACTCAACAACATCAGAGACCACTTGGATTAAACCCACAAATTAA 2670 43.56 MVNRKERRLAAKTSSNRRVKLDILAEPSSGDFGDSSNKEVGDGGNANDDAGSPNSPSSSGQRPENPLLLLGQYSDEEVEEESGREINHDTEKNSLDELDKQEKVDNHKATGKDEEEHLTADQENKEHSSSLDVLPMLEENGVIEDNTAESLHRDTDAVEQASVPWTSGTQTTGDVDSGWKMVLHEESNSYYYWNIVTGETSWEVPADLTQGNESAPKSAPGVEENADMYAYVATQPNNGLTNSTVFVATEINDSKTILEVHNENYADVVANDEGEGNHYNTIDGGKPPRSDGVNYKLSHEGVPRYSNDALSNEEAHNTDSSIHDMSFHIHQGTVGDPSSDSFPLLQLGENLLERLNFLKGSEGIDDRISKLKFELHIRLADIKSLVPYGSSLLPFWLHSENQLKKLEAAVNDEVLKYSQFANVGETNEPENKLHEGIREATPGALPDDSTPMGCHHTLADNISQLETIASHEKGTPADTVPNVGLPSVEDADMDVEMEVEGELGRQNGAEQDQSIPLLSHEQDEFDGSEEDIDIPHPPNDEWIPPPPPPDEEPLPPPPPDEPPEVPYPPTASELQTAQPYSYGEQYNFTYPVSGYEYYGQTNTELPSDGYYVDANGCEVAPLPAVYYAAVPNPYPNATSIMNHGDSVTYYSLQEGSVPSAPGVSSSVETSGLYKSVHESIASDQILSSTEVPPISSSTRAPATSLVARDASVVSAPAVTTTVTSTEPVPKVQSKVPRNKKRTVAAVSTLRSNKKVSGLVDKWKAVKEELHEEEEDEPENAFEVLEKKRQREIEQWHAQQIATGEAKDNANFQPLGGDWRERVRRKRAKKSTEVAETLAKTIDDTNQQPDLVELTKQLPSGWQAYWDEGSKQVYYGNSTTSETTWIKPTN 889
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00505 889 MobiDBLite consensus disorder prediction 523 572 - -
Lomi1g00505 889 MobiDBLite consensus disorder prediction 272 293 - -
Lomi1g00505 889 PANTHER OS06G0298400 PROTEIN 1 889 - -
Lomi1g00505 889 MobiDBLite consensus disorder prediction 81 128 - -
Lomi1g00505 889 SMART ww-5 174 207 IPR001202 GO:0005515(InterPro)
Lomi1g00505 889 SMART ww-5 856 889 IPR001202 GO:0005515(InterPro)
Lomi1g00505 889 Gene3D - 172 212 - -
Lomi1g00505 889 MobiDBLite consensus disorder prediction 538 569 - -
Lomi1g00505 889 MobiDBLite consensus disorder prediction 48 65 - -
Lomi1g00505 889 MobiDBLite consensus disorder prediction 1 130 - -
Lomi1g00505 889 SUPERFAMILY WW domain 164 206 IPR036020 GO:0005515(InterPro)
Lomi1g00505 889 CDD WW 177 207 IPR001202 GO:0005515(InterPro)
Lomi1g00505 889 Pfam WW domain 857 887 IPR001202 GO:0005515(InterPro)
Lomi1g00505 889 Pfam WW domain 177 205 IPR001202 GO:0005515(InterPro)
Lomi1g00505 889 MobiDBLite consensus disorder prediction 1 15 - -
Lomi1g00505 889 ProSitePatterns WW-rsp5-WWP domain signature. 861 887 IPR001202 GO:0005515(InterPro)
Lomi1g00505 889 CDD WW 858 888 IPR001202 GO:0005515(InterPro)
Lomi1g00505 889 ProSitePatterns WW-rsp5-WWP domain signature. 179 205 IPR001202 GO:0005515(InterPro)
Lomi1g00505 889 ProSiteProfiles WW-rsp5-WWP domain profile. 173 207 IPR001202 GO:0005515(InterPro)
Lomi1g00505 889 SUPERFAMILY WW domain 853 888 IPR036020 GO:0005515(InterPro)
Lomi1g00505 889 Gene3D - 853 889 - -
Lomi1g00505 889 ProSiteProfiles WW-rsp5-WWP domain profile. 855 889 IPR001202 GO:0005515(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00505 K24774 formin-binding protein 4