Gene detail

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Species

Gene ID

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Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00516	ATGGTGCAGTTCTTAGGTCTGGTTCAAGTGGTTGTAAACACTGTGGCCTTGAAGCTAGATTGTCTGTCTCATGCCGTACATGCAGCTACCAGTACCCAAAGTGCTCCTGGCATTGAAGCTGCAGTTCATCCTCAGAAAGATTCTTCTTTAGCTGGAGCAGAATCAGGTTTGGGCAACAAAAACTTGAATGATGGATTATCCACATCAGATGAGCGGAGAAGTGTCAAAGTGAATGACATCTTCATGAAACTACCACAAACTGATCTACATCATCTCTGCAGCCTTCTTGGCCATGAGGGGTTTTCAGATAAAGTTTACACACTCACTGGCGAGAATCTGAAGAAGTTGGCATTGATTGCCCCCTTACATAGGAATTTCTTTATAGCAGAGCTTTTAGATTTAGCTCATAGTCTGAGCAATTCAGCTGTAAATGAACTCAGCACACTCAGATATTCACAGATGCTGGGTCTTAGCAATGGATCCATCACTGGGGCTTCAGTTCTAAGAATACTTCAGATACTTAACTTTCTCACGGTACTAAACAGTACTGACACCAAGAGTGTGGGGAGTGATGGCGATCAGGTGCATGCCACCATATGGAAACTAAATGTTTCCCTTGAGCCCTTGTGGCAAGAATTGAGCAAGTGTATAGGTGTCATCGAGTCACAGCTGGGTCAGGGCTCTTCCTCTTCTGTTACTGTGAACTTGAATGTAGGCAATCCTTCCCTTCCTCCTGGAACTCAGAGAGTATTGCCTTTTATTGAGGCTTTCTTGTTTTTATGTGATAAGCTTCAAGCAAACAATTCTCATTTGCATCAAGATAATGCTCTTGCAACAGCAAGTGAAGTCAAACAGTTGCCTAAAACTTTTTCCCCTAGTCAAACAATTGACGGCACTGGAATATTTACTAAGTTTGCTGAGAAGCATCACAGGATGTTAAACACTTTTATCAGACAAGATCCGAGTTTGTTGGAGAAGTCGCTTTCTATGTTGCTAAAAGCTCCAAGGTTTATGGACTTCGATAACAAAAGGGCTTATTTCCGTTCTAGAATTAGGCAGCAGCATGATCAACACCTAGCAGGTTCATTGCGGATAAGTGTTCGGCGGGCATATATTCTAGAAGATTCCTATCATCAGCTGCGGATGCGGCCCTTGCCAGATATGATAAGACGGTTAAATGTCCGTTTTCAAGGTGAAGAAGGTGTAGATGCTGGTGGTTTGACAAGAGAGTGGTATCAGTTATTGTCACGGGTCATATTTGATAAGGGAGCTTTGCTTTTTACTACCGGTGGAAACGATGCGACTTTTCAGCCGAACCCTAATTCGGTATATCAGACCGAGCATATTTCTTACTTCAGATTTGTGGGGCGTGTGGTTGCTAAAGCTTTGTTTGATGGGCAATTATTGGATGTTTACTTCACCCGGTCATTCTATAAGCACATTCTTGGTGTGAAGGTAACATATCATGATATAGAAGCTGTTGACCCTGCTTACTACAAGAACTTGAAGTGGATGTTGGAGAATGATGTAAGTGACATACCTGATCTGACTTTTAGCATGGATCCGGGTGAAGAAAAACACATCCTTTATGAGAAAACAGAGGTAACTGATTATGAGCTCAAACCAGGTGGAAGAAATATAAGGGTGACAGAAGAAACAAAACATGAGTATGTGGATCTTGTTGCTGATCATAGACTAACGAATGCAATACGTCCTCAAATCACTTCTTTCTTAGAGGGATTTAATGAATTGATACCACGAGAAATGATTTCTATTTTTAATGATAAAGAACTTGAGCTGTTAATAAGTGGGCTTCCAAGAATTGATTTGAATGATCTGAAGGCCAACACCGAATATATTGGCTATACGGAAAGTTCTAGTGTCATTATATGGTTTTCGGAGGTTGTTGAAGCATTTAACAAGGAAGATAGAGCGAGATTGCTTCAATTCGTAACTGGTACATCAAAGGTTCCATTGGAAGGTTTCAAGGCTTTGCAAGGTATTGCAGGCCCACAGAGGTTTCAGATTCACAAAGCGTATGGAGCTCCAAAGAGACTGCCATCGGCTCATACCTGCTTCAACCAATTAGATCTTCTTGAATACATGTCAAAGGAACAGCTAGAAGAACGGCTGCTGCTTGCGATTCGTGAAGCTAGTGAAGGTTTTGGGTTTGCATAG	2178	41.78	MVQFLGLVQVVVNTVALKLDCLSHAVHAATSTQSAPGIEAAVHPQKDSSLAGAESGLGNKNLNDGLSTSDERRSVKVNDIFMKLPQTDLHHLCSLLGHEGFSDKVYTLTGENLKKLALIAPLHRNFFIAELLDLAHSLSNSAVNELSTLRYSQMLGLSNGSITGASVLRILQILNFLTVLNSTDTKSVGSDGDQVHATIWKLNVSLEPLWQELSKCIGVIESQLGQGSSSSVTVNLNVGNPSLPPGTQRVLPFIEAFLFLCDKLQANNSHLHQDNALATASEVKQLPKTFSPSQTIDGTGIFTKFAEKHHRMLNTFIRQDPSLLEKSLSMLLKAPRFMDFDNKRAYFRSRIRQQHDQHLAGSLRISVRRAYILEDSYHQLRMRPLPDMIRRLNVRFQGEEGVDAGGLTREWYQLLSRVIFDKGALLFTTGGNDATFQPNPNSVYQTEHISYFRFVGRVVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPAYYKNLKWMLENDVSDIPDLTFSMDPGEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHRLTNAIRPQITSFLEGFNELIPREMISIFNDKELELLISGLPRIDLNDLKANTEYIGYTESSSVIIWFSEVVEAFNKEDRARLLQFVTGTSKVPLEGFKALQGIAGPQRFQIHKAYGAPKRLPSAHTCFNQLDLLEYMSKEQLEERLLLAIREASEGFGFA	725

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00516	725	SUPERFAMILY	Hect, E3 ligase catalytic domain	345	717	IPR035983	GO:0004842(InterPro)
	Lomi1g00516	725	CDD	HECTc	363	723	IPR000569	GO:0004842(InterPro)
	Lomi1g00516	725	Gene3D	Hect, E3 ligase catalytic domains	318	602	-	-
	Lomi1g00516	725	Gene3D	Hect, E3 ligase catalytic domain	485	569	-	-
	Lomi1g00516	725	ProSiteProfiles	HECT domain profile.	384	725	IPR000569	GO:0004842(InterPro)
	Lomi1g00516	725	Gene3D	Hect, E3 ligase catalytic domain	606	725	-	-
	Lomi1g00516	725	Pfam	HECT-domain (ubiquitin-transferase)	414	724	IPR000569	GO:0004842(InterPro)
	Lomi1g00516	725	FunFam	E3 ubiquitin-protein ligase UPL1	606	725	-	-
	Lomi1g00516	725	MobiDBLite	consensus disorder prediction	49	68	-	-
	Lomi1g00516	725	FunFam	E3 ubiquitin-protein ligase NEDD4-like	485	569	-	-
	Lomi1g00516	725	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	258	725	IPR050409	GO:0000209(PANTHER)
	Lomi1g00516	725	FunFam	E3 ubiquitin-protein ligase UPL1	337	494	-	-
	Lomi1g00516	725	SMART	hect-3	382	725	IPR000569	GO:0004842(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00516	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	121290	Lomi1g00516	Lomi5g01915

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:4875047	Lomi4g01144	Lomi-Chr4:18475269	dispersed
	Lomi	Lomi-Chr1:4875047	Lomi11g01832	Lomi-Chr11:26684745	wgd
	Lomi	Lomi-Chr1:4875047	Lomi5g01915	Lomi-Chr5:30434132	wgd