AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00522 ATGGCCACACACTCATACACAATCCTTCAACTCAGTGGTTGTCAAACTACTAGTAGTAATACTATTAATGTAACAACTTCTTTATCTTCATCATCCTTTAAATTATCTAGGGCTCCCCGGCGGTTGGGATGTCGGCGTTCGGGCGTCTTCTGTTCGTTCTCTTCAATGGAGTCTGCAAAGATTAAGGTTGTCGGTGTCGGTGGTGGTGGCAACAATGCCGTCAATCGCATGATTGGTAGCGGCTTGCAGGGTGTTGATTTTTACGCCATTAACACGGATTCTCAAGCACTTGTACAATCCGTTGCACAAAACCCAATTCAAATTGGAGAGCTTTTGACTCGTGGACTTGGTACTGGTGGGAATCCACTTTTAGGAGAACAGGCGGCAGAGGAATCAAAGGAAGCCATTGGTAATGCTCTTAAAGGATCGGATCTTGTGTTCATAACAGCAGGTATGGGTGGCGGTACAGGCTCTGGTGCTGCTCCAGTTGTAGCCCAAATTGCAAAGGAAGCAGGATATTTAACTGTTGGTGTCGTTACCTACCCATTCAGCTTTGAAGGACGCAAAAGATCAGTCCAGGCTTTGGAGGCTATTGAGAAGCTGCAAAAGAATGTTGACACACTTATAGTGATCCCAAATGATCGTTTACTGGATATTGCTGATGAGGCGACTCCGCTTCAGGATGCTTTTCTTCTTGCTGATGATGTGCTCCGCCAAGGAGTTCAGGGAATTTCAGATATAATTACAATACCTGGGCTGGTAAATGTGGACTTTGCTGATGTTAAAGCAGTGATGAAAGATTCTGGAACTGCAATGCTTGGTGTCGGGGTTTCCTCAAGCAAAAATCGAGCTGAAGAAGCAGCTGAACAAGCAACTCTTGCACCTTTAATTGGTTCATCGATCCAATCTGCTACTGGAGTCGTTTATAACATAACTGGGGGGAAAGACATAACCCTGCAAGAAGTCAATAGGGTGTCGCAAGTGGTAACAAGCTTAGCAGATCCTTCAGCAAACATTATATTTGGGGCAGTTGTGGATGAGAGATACAACGGGGAGATCCATGTGACTATCGTTGCTACAGGATTTGCACAGTCGTTTCAGAAATCTCTTCTGGCTGACCCTAAAGGAGCAAAACTAGTCGATAGAAATCAAGAAGCTGTACAACCTTCAAGTTCCCCAAAATCTTTAACCATGCCATCTGCTACTCCATCTCGCTCTAGGAAACTCTTCTTTTAA 1236 44.66 MATHSYTILQLSGCQTTSSNTINVTTSLSSSSFKLSRAPRRLGCRRSGVFCSFSSMESAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALVQSVAQNPIQIGELLTRGLGTGGNPLLGEQAAEESKEAIGNALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSVQALEAIEKLQKNVDTLIVIPNDRLLDIADEATPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDERYNGEIHVTIVATGFAQSFQKSLLADPKGAKLVDRNQEAVQPSSSPKSLTMPSATPSRSRKLFF 411
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00522 411 FunFam Cell division protein FtsZ 1, chloroplastic 225 362 - -
Lomi1g00522 411 Hamap Cell division protein FtsZ [ftsZ]. 56 376 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Lomi1g00522 411 PRINTS Cell division protein FtsZ signature 236 258 IPR003008 GO:0005525(InterPro)
Lomi1g00522 411 PRINTS Cell division protein FtsZ signature 145 165 IPR003008 GO:0005525(InterPro)
Lomi1g00522 411 PRINTS Cell division protein FtsZ signature 259 280 IPR003008 GO:0005525(InterPro)
Lomi1g00522 411 PRINTS Cell division protein FtsZ signature 173 194 IPR003008 GO:0005525(InterPro)
Lomi1g00522 411 SMART Tubulin-C-4 254 371 IPR018316 -
Lomi1g00522 411 CDD FtsZ-type1 76 361 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Lomi1g00522 411 ProSitePatterns FtsZ protein signature 1. 91 125 IPR020805 GO:0005525(InterPro)
Lomi1g00522 411 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 19 388 IPR045061 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
Lomi1g00522 411 FunFam Cell division protein FtsZ 1, chloroplastic 53 267 - -
Lomi1g00522 411 MobiDBLite consensus disorder prediction 383 411 - -
Lomi1g00522 411 ProSitePatterns FtsZ protein signature 2. 144 165 IPR020805 GO:0005525(InterPro)
Lomi1g00522 411 SMART Tubulin-4 60 252 IPR003008 GO:0005525(InterPro)
Lomi1g00522 411 Gene3D - 268 373 IPR037103 -
Lomi1g00522 411 NCBIfam cell division protein FtsZ 55 370 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Lomi1g00522 411 SUPERFAMILY Tubulin C-terminal domain-like 254 368 IPR008280 -
Lomi1g00522 411 SUPERFAMILY Tubulin nucleotide-binding domain-like 59 255 IPR036525 -
Lomi1g00522 411 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 153 159 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lomi1g00522 411 Pfam Tubulin-FtsZ family, GTPase domain 60 220 IPR003008 GO:0005525(InterPro)
Lomi1g00522 411 Pfam FtsZ family, C-terminal domain 269 362 IPR024757 -
Lomi1g00522 411 Gene3D Tubulin-FtsZ, GTPase domain 51 267 IPR036525 -
Lomi1g00522 411 MobiDBLite consensus disorder prediction 384 404 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00522 K03531 cell division protein FtsZ
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Event-related genes

Select Gene_1 Gene_2 Event_name
324191 Lomi2g04105 Lomi1g00522
333286 Lomi1g00522 Lomi2g04105
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:4988897 Lomi3g02862 Lomi-Chr3:34893675 dispersed
Lomi Lomi-Chr1:4988897 Lomi2g04105 Lomi-Chr2:46678892 wgd