AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00528 ATGTTACGAATGCATCCGGATAAAATTAAGATGTCAATTGGTGGGGAGGCTATTGAGAGTGTTATTGGACGTGGGGAAGATGATGAGTTGCCTGAATTTGAATTTGGTGCTTTTGATCTTGTTCAATTTGGTAAAACAAAGAATGAGAAGCTTGCAAGTGAGGAGTTTTTGAATGAGTATTTACAGAAAGGCCAGATCTCAAGACATACAATGCGTGATTTAGTTGATTCGATTCGATTGCTCGGTACTCATGATGATTTTTATTGCTCTGAGTGGGTTGAGGAGCCAACGCTTTTGATCACTCGCTTTGAGTATGCAAACCTTTTTCACACGATCACTGACTGGTACAGCGCCTACGTGTCTTCCAGAGTTACTGGCTTGCCAAACCGACCCCAATTGGTTTTTGTAGATGGTCACTGCATGACACCATTGGAAGAAACATGGAAAGCGGTGTTCTCAGGTCTAAGATATGCTAAAAATTTCACTGGTCCCGTTTGCTTTCGTCATGCTATTCTATCCCCTTTGGGGTATGAAACAGCCATGTTCAAGGGTCTAACTGAAGACATTGATTGTTATGGAGCTCCAGCCCATGATTTATGGCAGAACCCTGATGACAAGAAGACGGCGAGAATCTCAGAGTTCGGGGAGATGATACGGGCTGCATTTTCTCTTCCTCTACATGTACACCACCACAGCTCAAAATCAGGATCACGGAATCATAACGTTCTCTTTGTTCGGCGTGAGGATTATTTGGCACATCCTCGCCATGGTGGCAAGGTTCAATCGAGGCTTAGCAACGAACAAGAAGTATTTGATGCACTAAAAACCTGGTCATCGAGTCATACAGAATGCAAAATTAATTTAGTGGATGGACTTTTTGGACATATGTCTATGAAAGAACAGGTGAGAGCAATTCAAGATGCATCAGTTATTGTGGGTGCTCATGGTGCAGGACTCACTCACATAGTGTCGGCAACAGAAGCCAAAATTTTAGAGATTGTTGCAAGCGAGTTTAGGAGGCCTCATTTTGAACTAATTTCTCAGTGGAAAGGTTTACATTACCACCCAATATATTTGGGTGGATCACACGCTAGTCCAGCTGTAGTGATAGACAAGCTCAGGGATATTTTGAAGACCTTAGGATGCTGA 1149 42.82 MLRMHPDKIKMSIGGEAIESVIGRGEDDELPEFEFGAFDLVQFGKTKNEKLASEEFLNEYLQKGQISRHTMRDLVDSIRLLGTHDDFYCSEWVEEPTLLITRFEYANLFHTITDWYSAYVSSRVTGLPNRPQLVFVDGHCMTPLEETWKAVFSGLRYAKNFTGPVCFRHAILSPLGYETAMFKGLTEDIDCYGAPAHDLWQNPDDKKTARISEFGEMIRAAFSLPLHVHHHSSKSGSRNHNVLFVRREDYLAHPRHGGKVQSRLSNEQEVFDALKTWSSSHTECKINLVDGLFGHMSMKEQVRAIQDASVIVGAHGAGLTHIVSATEAKILEIVASEFRRPHFELISQWKGLHYHPIYLGGSHASPAVVIDKLRDILKTLGC 382
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00528 382 Pfam Glycosyltransferase 61 230 325 IPR049625 GO:0016757(InterPro)
Lomi1g00528 382 PANTHER PUTATIVE-RELATED 3 382 IPR007657 GO:0016757(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00528 K03714 glycoprotein 2-beta-D-xylosyltransferase [EC:2.4.2.38]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
324196 Lomi2g04100 Lomi1g00528
333281 Lomi1g00528 Lomi2g04100
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:5036120 Lomi2g04100 Lomi-Chr2:46632282 wgd