Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00534	ATGGATATGGTAGCAGTTGAAGCCGTTTTAGTTAGGAACAATTCTTCTTCATATTCTTCATCATTATATAAAACAAGAATCCCTAAACCATCTATTTTCAGATTATCAACAACAACAAGAATAAGAAGGTGCAACCCTAAAATCTTACATTGTAGGAATAATAGTACATCTGCTGCTGCTGCTGCTACTAGATTCAGCAACCATAGGATAAACATTCTTGATTCAAGAAATACTTTGAGGTCTGTTTTGGTTAAAAGTAGCAACCACCATTCAACAAACCCCAACACAAATGTTGTGGAATTTGTTAAAAAAGGTTTGATTTTGGCTGCAGCATGTTGTGTGTTGGGATGCTGCAAGGCTGCTCATGGAATTGAATATTCTGTGTGTTTAGAGCAGATGAAGTTGTCATTTATTAATTCCTTACCCAAAGTTTTGATGGTTCTTAAAGTTTTGAAGGAACAAGGTTTAATCTTAGCTGCCCTTTTTGGTCTTTCTGCGTTTTTTTCCATGGCTGAAACTTCAATTACCACTCTTTGGCCTTGGAAGGTTCGAGAATTGGCTGAGAAAGAGTCTGAAAATGGCGTGTTTAAAATGCTACGGAATGATGTTACTCGGTTCTTGACAACCATACTTATTGGCACCACTGTTGTTAATATCGGAGCAACGGCACTGGTCACTGAAGCAGCAACAACAATCTTTGGCGAAGCAGGTGTCAGTGCAGCCACCGGAGTGATGACGGTTGCTGTTTTGCTACTGACTGAAATAACTCCAAAAAGTATAGCTGTTCACAATGCCACTGAAGTTGCAAGATTTGTGGTCAGGCCGATTGCTTGGCTTTCTTTAGTTTTATACCCTGTTGGAAGAGTTGTAACATATCTCTCAATGGGAATGCTCAAGTTGCTTGGTCTGAAAGGAAGAAGTGAACCATATGTGACTGAGGATGAGTTGAAGTTGATGTTGCGAGGGGCTGAACTAAGTGGGGCCATAGAAGAGGAAGAACAGGATATGATTGAAAATGTTTTGGAAATTAAAGACACATATGTTCGAGAGGTTATGACACCTTTGGTTGATGTTGTTGCTAGTGATTCTAGTGCAACACTTGTTGATTTCCATGCCTTGTGGGTAACTCATCAGTATTCAAGGGTACCGGTATTTGAGCAACGTGTTGATAATATAGTGGGTATCGCATATGCAATGGATCTATTAGACTATGTTCAGAAGGGAGACCTACTAGAAACTACCACCGTGGGGGATATGGCTCATAAGCCTGCTTATTTTGTGCCTGATTCAATGTCAGTGTGGAATCTTCTTAGGGAATTTCGCATCAGGAAGGTACACATGGCAGTTGTCTTAAACGAATATGGTGGGACAGTTGGAATTGTAACACTGGAGGATGTGGTTGAAGAAATCGTTGGTGAAATTTTTGATGAAAATGATTCAAAAGAGGAAATAGAGAAAAAGACTGGATATATTGTAATGCGGGCTGAAGGTATTTACGATGTGGATGCAAATACATCGATTGACCAGCTTTCTGAAGATCTCAACATAAAGATGCCAGAGGGCCATCAATATGAAACGGTGTCAGGGTTTGTGTGTGAGGCATTTGGATACATCCCAAAGACAGGTGAAAGTATAAAAGTGGTACTTGAGAAGGAACAGGATCATGATGAGTATACAGAAGACGATGGTGATCGTCAAAATCAAAAGGAAAAAGAAAAGAACCAAATATTTCAAATAGAGATATTAGCAGGAAATGCGAGAAAGGTTGGTGCAGTGAGGTTTGAACGTGTAACACATGAGGAAGAGGAAACGACAAAAGATGTGAAGAAGCTGGTTCCGATAATCATGAAAAGGAGATGGGGAGGTGATGATGATAGTGAAACAAGTAGGAGGATTGAGTATGAGAAGAATGATGTAATCCCACAACTTGAAATCAAACAGGGAGAATAA	1950	39.69	MDMVAVEAVLVRNNSSSYSSSLYKTRIPKPSIFRLSTTTRIRRCNPKILHCRNNSTSAAAAATRFSNHRINILDSRNTLRSVLVKSSNHHSTNPNTNVVEFVKKGLILAAACCVLGCCKAAHGIEYSVCLEQMKLSFINSLPKVLMVLKVLKEQGLILAALFGLSAFFSMAETSITTLWPWKVRELAEKESENGVFKMLRNDVTRFLTTILIGTTVVNIGATALVTEAATTIFGEAGVSAATGVMTVAVLLLTEITPKSIAVHNATEVARFVVRPIAWLSLVLYPVGRVVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTYVREVMTPLVDVVASDSSATLVDFHALWVTHQYSRVPVFEQRVDNIVGIAYAMDLLDYVQKGDLLETTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIEKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPKTGESIKVVLEKEQDHDEYTEDDGDRQNQKEKEKNQIFQIEILAGNARKVGAVRFERVTHEEEETTKDVKKLVPIIMKRRWGGDDDSETSRRIEYEKNDVIPQLEIKQGE	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00534	649	Gene3D	-	327	482	IPR046342	-
	Lomi1g00534	649	ProSiteProfiles	CBS domain profile.	419	477	IPR000644	-
	Lomi1g00534	649	ProSiteProfiles	CBS domain profile.	352	413	IPR000644	-
	Lomi1g00534	649	SUPERFAMILY	CBS-domain pair	335	474	IPR046342	-
	Lomi1g00534	649	CDD	CBS-pair-CorC-HlyC-assoc	348	468	IPR044751	-
	Lomi1g00534	649	ProSiteProfiles	CNNM transmembrane domain profile.	147	333	IPR002550	-
	Lomi1g00534	649	FunFam	Magnesium-cobalt efflux protein CorC	329	479	-	-
	Lomi1g00534	649	Pfam	Cyclin M transmembrane N-terminal domain	156	333	IPR002550	-
	Lomi1g00534	649	Pfam	Transporter associated domain	494	597	IPR005170	-
	Lomi1g00534	649	MobiDBLite	consensus disorder prediction	552	573	-	-
	Lomi1g00534	649	Gene3D	-	489	583	IPR016169	-
	Lomi1g00534	649	SUPERFAMILY	FAD-binding-transporter-associated domain-like	490	604	IPR036318	GO:0050660(InterPro)
	Lomi1g00534	649	PANTHER	HEMOLYSIN-RELATED	131	607	-	-
	Lomi1g00534	649	SMART	CorC-HlyC-2	492	598	IPR005170	-
	Lomi1g00534	649	Pfam	CBS domain	416	471	IPR000644	-
	Lomi1g00534	649	Pfam	CBS domain	348	406	IPR000644	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00534	K03699	magnesium and cobalt exporter, CNNM family

Event-related genes

Select	Gene_1	Gene_2	Event_name
	324199	Lomi2g04094	Lomi1g00534
	333278	Lomi1g00534	Lomi2g04094

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:5074131	Lomi2g04431	Lomi-Chr2:49532213	dispersed
	Lomi	Lomi-Chr1:5074131	Lomi2g04094	Lomi-Chr2:46588917	wgd