Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04094 | ATGGATGTAGTAGCAGTTGAAGTCTTTTTAGTTTGGAACAATTCTTCTTCATCATTATATAAAACAAGAATCCCAAAACCATCTATTTTCAGATTATCAACAACAACAACAAGAATAAGAAGGTGCAACCCTAAAGTCTTACATTGTAGGAGTGATAGTACATCTGCTGCTGCTGTTACTAGATTCAGCAACCATAGTATAAACATTCTTGATTCAAGAAATACTTTGAGGTCTGTTTTGGTTAAAAGTAGCAACCACCATTCAACAAATCCCAACCCAAATGTTGTGGATTTTGTTAAAAAAGGTTTGATTTTGGCTGCAGCATGTTGTGTCTTGGGATGCTGCAAAGCTGCTCATGGGGTTGAATATTCTGTGGGTTTAGAGCAGATTAAGTTGTCATTTGTTAATTCTTTACCCAAAGTTTTGATGGTTCTTAAAGTTTTGAAGGAACAAGGTTTAATCTTAGCTGCCCTTTTTGGTCTATCTGCATTTTTCTCCATGGCTGAAACTTCAATTACCACTCTTTGGCCTTGGAAGGTTCGAGAATTGGCTGAGAAAGAGTCTGAAAACGGTGTATTCAAAATGCTTCGTAATGATGTTACTCGGTTCTTGACAACCATACTTATTGGCACCACTGTTGTCAATATTGGAGCAACAGCACTGGTCACTGAAGCAGCAACTACAATTTTTGGCGAAGCAGGTGTCAGCGCAGCCACCGGAGTAATGACAGTTGCTGTTTTGCTACTGACTGAAATAACTCCAAAAAGTATAGCTGTTCACAATGCCACCGAGGTTGCAAGATTTGTGGTCAGGCCGATTGCATGGCTTTCTTTAGTTTTATATCCTGTTGGAAGAGTCGTAACATATCTATCAATGGGAATGCTCAAGTTGCTTGGTCTGAAAGGAAGAAGTGAACCATATGTGACTGAGGATGAGTTGAAGTTGATGTTACGAGGTGCTGAACTAAGTGGGGCCATAGAAGAGGAAGAACAGGATATGATTGAAAATGTTTTGGAAATTAAAGACACATATGTTCGTGAGGTTATGACACCTTTGGTTGATGTTGTTGCGAGTGATTCAAGTGCAACACTTGTTGATTTCCATACCTTGTGGGTAACTCATCAGTATTCAAGGGTACCGGTATTTGAGCAACGTGTTGATAATATAGTGGGTATCGCATATGCAATGGATCTATTAGACTATGTTCAGAAGGGAGACCTACTGGAAACAACCACCGTGGGTGATATGGCTCATAAACCTGCTTATTTTGTGCCTGATTCAATGTCAGTGTGGAATCTTCTTAGGGAATTTCGCATCAGGAAGGTACACATGGCAGTTGTCTTAAACGAATATGGTGGGACAGTTGGAATTGTAACATTGGAAGATGTGGTTGAAGAAATTGTTGGCGAAATTTTTGATGAAAATGATTCAAAAGAGGAAATAGAGAAAAAGACTGGTTATATTGTAATGCGTGCTGAAGGAATTTACGATGTGGATGCAAATACATCTATTGACCAGCTTTCTGAAGATCTCAACATAAAGATGCCAGAGGGCCATCAATATGAAACAGTGTCAGGGTTTGTGTGTGAGGCATTTGGATACATCCCAAAGACAGGTGAAAGTATAAAAGTGGTGCTTGAGAAGGAAGAAGATCATGATGAGTATACCGAGCACGATGGTGATCGTCAAAATCATAAAGAAATAGAAAAGAACCAAATATTTCAAATAGAGATATTAGCAGGAAATGCGAGAAAGGTTGGTGCGGTGAGGTTTGAACGTGTAACGCATGAGGAGGAGGAAATGACAAAAGATGTGAAGAAGCTGGTTCCAAAAATCATGAAAAGGAGATGGGGAGGTGATGATGATAATGAAACAAGTAGGAGGATTGAGTATGAGAAGAATGATGTAATCCCACAACTTGAAATCAAACAGGGAGAATAA | 1941 | 39.21 | MDVVAVEVFLVWNNSSSSLYKTRIPKPSIFRLSTTTTRIRRCNPKVLHCRSDSTSAAAVTRFSNHSINILDSRNTLRSVLVKSSNHHSTNPNPNVVDFVKKGLILAAACCVLGCCKAAHGVEYSVGLEQIKLSFVNSLPKVLMVLKVLKEQGLILAALFGLSAFFSMAETSITTLWPWKVRELAEKESENGVFKMLRNDVTRFLTTILIGTTVVNIGATALVTEAATTIFGEAGVSAATGVMTVAVLLLTEITPKSIAVHNATEVARFVVRPIAWLSLVLYPVGRVVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTYVREVMTPLVDVVASDSSATLVDFHTLWVTHQYSRVPVFEQRVDNIVGIAYAMDLLDYVQKGDLLETTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIEKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPKTGESIKVVLEKEEDHDEYTEHDGDRQNHKEIEKNQIFQIEILAGNARKVGAVRFERVTHEEEEMTKDVKKLVPKIMKRRWGGDDDNETSRRIEYEKNDVIPQLEIKQGE | 646 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04094 | 646 | Gene3D | - | 486 | 579 | IPR016169 | - | |
| Lomi2g04094 | 646 | ProSiteProfiles | CBS domain profile. | 349 | 410 | IPR000644 | - | |
| Lomi2g04094 | 646 | FunFam | Magnesium-cobalt efflux protein CorC | 326 | 476 | - | - | |
| Lomi2g04094 | 646 | ProSiteProfiles | CBS domain profile. | 416 | 474 | IPR000644 | - | |
| Lomi2g04094 | 646 | SUPERFAMILY | FAD-binding-transporter-associated domain-like | 487 | 599 | IPR036318 | GO:0050660(InterPro) | |
| Lomi2g04094 | 646 | CDD | CBS-pair-CorC-HlyC-assoc | 345 | 465 | IPR044751 | - | |
| Lomi2g04094 | 646 | Pfam | CBS domain | 413 | 468 | IPR000644 | - | |
| Lomi2g04094 | 646 | Pfam | CBS domain | 345 | 403 | IPR000644 | - | |
| Lomi2g04094 | 646 | SUPERFAMILY | CBS-domain pair | 332 | 471 | IPR046342 | - | |
| Lomi2g04094 | 646 | Gene3D | - | 324 | 479 | IPR046342 | - | |
| Lomi2g04094 | 646 | PANTHER | HEMOLYSIN-RELATED | 128 | 604 | - | - | |
| Lomi2g04094 | 646 | Pfam | Cyclin M transmembrane N-terminal domain | 153 | 330 | IPR002550 | - | |
| Lomi2g04094 | 646 | SMART | CorC-HlyC-2 | 489 | 595 | IPR005170 | - | |
| Lomi2g04094 | 646 | ProSiteProfiles | CNNM transmembrane domain profile. | 144 | 330 | IPR002550 | - | |
| Lomi2g04094 | 646 | Pfam | Transporter associated domain | 491 | 594 | IPR005170 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04094 | K03699 | magnesium and cobalt exporter, CNNM family |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 324199 | Lomi2g04094 | Lomi1g00534 | |
| 333278 | Lomi1g00534 | Lomi2g04094 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:1968642 | Lomi2g04094 | Lomi-Chr2:46588917 | dispersed | |
| Lomi | Lomi-Chr2:46588917 | Lomi2g04431 | Lomi-Chr2:49532213 | dispersed | |
| Lomi | Lomi-Chr1:5074131 | Lomi2g04094 | Lomi-Chr2:46588917 | wgd |