AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04094 ATGGATGTAGTAGCAGTTGAAGTCTTTTTAGTTTGGAACAATTCTTCTTCATCATTATATAAAACAAGAATCCCAAAACCATCTATTTTCAGATTATCAACAACAACAACAAGAATAAGAAGGTGCAACCCTAAAGTCTTACATTGTAGGAGTGATAGTACATCTGCTGCTGCTGTTACTAGATTCAGCAACCATAGTATAAACATTCTTGATTCAAGAAATACTTTGAGGTCTGTTTTGGTTAAAAGTAGCAACCACCATTCAACAAATCCCAACCCAAATGTTGTGGATTTTGTTAAAAAAGGTTTGATTTTGGCTGCAGCATGTTGTGTCTTGGGATGCTGCAAAGCTGCTCATGGGGTTGAATATTCTGTGGGTTTAGAGCAGATTAAGTTGTCATTTGTTAATTCTTTACCCAAAGTTTTGATGGTTCTTAAAGTTTTGAAGGAACAAGGTTTAATCTTAGCTGCCCTTTTTGGTCTATCTGCATTTTTCTCCATGGCTGAAACTTCAATTACCACTCTTTGGCCTTGGAAGGTTCGAGAATTGGCTGAGAAAGAGTCTGAAAACGGTGTATTCAAAATGCTTCGTAATGATGTTACTCGGTTCTTGACAACCATACTTATTGGCACCACTGTTGTCAATATTGGAGCAACAGCACTGGTCACTGAAGCAGCAACTACAATTTTTGGCGAAGCAGGTGTCAGCGCAGCCACCGGAGTAATGACAGTTGCTGTTTTGCTACTGACTGAAATAACTCCAAAAAGTATAGCTGTTCACAATGCCACCGAGGTTGCAAGATTTGTGGTCAGGCCGATTGCATGGCTTTCTTTAGTTTTATATCCTGTTGGAAGAGTCGTAACATATCTATCAATGGGAATGCTCAAGTTGCTTGGTCTGAAAGGAAGAAGTGAACCATATGTGACTGAGGATGAGTTGAAGTTGATGTTACGAGGTGCTGAACTAAGTGGGGCCATAGAAGAGGAAGAACAGGATATGATTGAAAATGTTTTGGAAATTAAAGACACATATGTTCGTGAGGTTATGACACCTTTGGTTGATGTTGTTGCGAGTGATTCAAGTGCAACACTTGTTGATTTCCATACCTTGTGGGTAACTCATCAGTATTCAAGGGTACCGGTATTTGAGCAACGTGTTGATAATATAGTGGGTATCGCATATGCAATGGATCTATTAGACTATGTTCAGAAGGGAGACCTACTGGAAACAACCACCGTGGGTGATATGGCTCATAAACCTGCTTATTTTGTGCCTGATTCAATGTCAGTGTGGAATCTTCTTAGGGAATTTCGCATCAGGAAGGTACACATGGCAGTTGTCTTAAACGAATATGGTGGGACAGTTGGAATTGTAACATTGGAAGATGTGGTTGAAGAAATTGTTGGCGAAATTTTTGATGAAAATGATTCAAAAGAGGAAATAGAGAAAAAGACTGGTTATATTGTAATGCGTGCTGAAGGAATTTACGATGTGGATGCAAATACATCTATTGACCAGCTTTCTGAAGATCTCAACATAAAGATGCCAGAGGGCCATCAATATGAAACAGTGTCAGGGTTTGTGTGTGAGGCATTTGGATACATCCCAAAGACAGGTGAAAGTATAAAAGTGGTGCTTGAGAAGGAAGAAGATCATGATGAGTATACCGAGCACGATGGTGATCGTCAAAATCATAAAGAAATAGAAAAGAACCAAATATTTCAAATAGAGATATTAGCAGGAAATGCGAGAAAGGTTGGTGCGGTGAGGTTTGAACGTGTAACGCATGAGGAGGAGGAAATGACAAAAGATGTGAAGAAGCTGGTTCCAAAAATCATGAAAAGGAGATGGGGAGGTGATGATGATAATGAAACAAGTAGGAGGATTGAGTATGAGAAGAATGATGTAATCCCACAACTTGAAATCAAACAGGGAGAATAA 1941 39.21 MDVVAVEVFLVWNNSSSSLYKTRIPKPSIFRLSTTTTRIRRCNPKVLHCRSDSTSAAAVTRFSNHSINILDSRNTLRSVLVKSSNHHSTNPNPNVVDFVKKGLILAAACCVLGCCKAAHGVEYSVGLEQIKLSFVNSLPKVLMVLKVLKEQGLILAALFGLSAFFSMAETSITTLWPWKVRELAEKESENGVFKMLRNDVTRFLTTILIGTTVVNIGATALVTEAATTIFGEAGVSAATGVMTVAVLLLTEITPKSIAVHNATEVARFVVRPIAWLSLVLYPVGRVVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTYVREVMTPLVDVVASDSSATLVDFHTLWVTHQYSRVPVFEQRVDNIVGIAYAMDLLDYVQKGDLLETTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIEKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPKTGESIKVVLEKEEDHDEYTEHDGDRQNHKEIEKNQIFQIEILAGNARKVGAVRFERVTHEEEEMTKDVKKLVPKIMKRRWGGDDDNETSRRIEYEKNDVIPQLEIKQGE 646
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04094 646 Gene3D - 486 579 IPR016169 -
Lomi2g04094 646 ProSiteProfiles CBS domain profile. 349 410 IPR000644 -
Lomi2g04094 646 FunFam Magnesium-cobalt efflux protein CorC 326 476 - -
Lomi2g04094 646 ProSiteProfiles CBS domain profile. 416 474 IPR000644 -
Lomi2g04094 646 SUPERFAMILY FAD-binding-transporter-associated domain-like 487 599 IPR036318 GO:0050660(InterPro)
Lomi2g04094 646 CDD CBS-pair-CorC-HlyC-assoc 345 465 IPR044751 -
Lomi2g04094 646 Pfam CBS domain 413 468 IPR000644 -
Lomi2g04094 646 Pfam CBS domain 345 403 IPR000644 -
Lomi2g04094 646 SUPERFAMILY CBS-domain pair 332 471 IPR046342 -
Lomi2g04094 646 Gene3D - 324 479 IPR046342 -
Lomi2g04094 646 PANTHER HEMOLYSIN-RELATED 128 604 - -
Lomi2g04094 646 Pfam Cyclin M transmembrane N-terminal domain 153 330 IPR002550 -
Lomi2g04094 646 SMART CorC-HlyC-2 489 595 IPR005170 -
Lomi2g04094 646 ProSiteProfiles CNNM transmembrane domain profile. 144 330 IPR002550 -
Lomi2g04094 646 Pfam Transporter associated domain 491 594 IPR005170 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04094 K03699 magnesium and cobalt exporter, CNNM family
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Event-related genes

Select Gene_1 Gene_2 Event_name
324199 Lomi2g04094 Lomi1g00534
333278 Lomi1g00534 Lomi2g04094
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1968642 Lomi2g04094 Lomi-Chr2:46588917 dispersed
Lomi Lomi-Chr2:46588917 Lomi2g04431 Lomi-Chr2:49532213 dispersed
Lomi Lomi-Chr1:5074131 Lomi2g04094 Lomi-Chr2:46588917 wgd