AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04099 ATGTTATGCTTTTCAACAGTCGGCAAAAATGTCATGAATACCAAAAAGCTCCGGACTCCTGCAGAGGTCGTTCAAAAGACTCGATCTCTTCTCCTTTATTCCAACAACTCTTTCAATGTTGGCTCCCAGACAACAGAGTTGAACTCGATAATTAAGGAACTGAAGTTGATTCTTTATGGTGATGATGACTGCGAGCCTTCTGAGGAAGCTTGTATGCAGTTGACTGAGGAGTTCTTTAAAGAAGACACGTTGCGTTTGCTTGTTATTTTTCTTCCCAAGTTGAGCTTGGAGGCCCGTAAAGATGCTACTCAAGTTGTTGCAAGTTTGCAAAGGCAACCGTTGCCGTCACGCTTCCAGGCTTCTAGATATCTGGAAGCCAATCTAGACCTTGTAGACATTCTAATATCAGGGTATGAAGATCCTCAACTAGCTCTTCATTATGGTAGGATGTTAAAGGAGTGCCTACGTCATCAAATTGTTGCAAGTTACATATTAGAACCAAGTCAACTGAAGAAACTTTTTGGTTACATTCAGCATCCAAGTTTTGATATTGCTGCTGATGCTGCAGATGTGTTCAAGGATCTTTTGACTAGGCATAAGTCAACTGTTTCTGGATCTTTGTCCAAAAACTATAGTTGGTTTTTTACTGAATTTAACGAAAAGCTGATGAAATCTACAAACTATATCACCAGAAGACAAGCTGTCAAGTTATTAGGATGCATATTGCTTGAGCGTTCGAATTCGTATGTTATGACGCATTATGTAAGCTCAAAAGAAAACCTAATGATTCTGATGAATCTACTAAGGGATACAAGTAGGAACATCCAGATAGATGCATTTCATGTGTTCAAGCTCTTTGTAGCAAATGAAAACAAGTCTTCTGAGATAGTGAGCATACTTGTTAAAAACAGAAGCAAGCTTATACGTTTACTAGGCACCTTTATGCAAACGGATGATGAAGTGTTTGAGACAGACAAAATTCAGGTGGTTAACGAACTCGCTGTACTGGACCTTCAAGAGTAA 1023 39.2 MLCFSTVGKNVMNTKKLRTPAEVVQKTRSLLLYSNNSFNVGSQTTELNSIIKELKLILYGDDDCEPSEEACMQLTEEFFKEDTLRLLVIFLPKLSLEARKDATQVVASLQRQPLPSRFQASRYLEANLDLVDILISGYEDPQLALHYGRMLKECLRHQIVASYILEPSQLKKLFGYIQHPSFDIAADAADVFKDLLTRHKSTVSGSLSKNYSWFFTEFNEKLMKSTNYITRRQAVKLLGCILLERSNSYVMTHYVSSKENLMILMNLLRDTSRNIQIDAFHVFKLFVANENKSSEIVSILVKNRSKLIRLLGTFMQTDDEVFETDKIQVVNELAVLDLQE 340
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04099 340 Pfam Mo25-like 15 336 IPR013878 -
Lomi2g04099 340 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 13 337 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Lomi2g04099 340 Gene3D - 10 336 IPR011989 -
Lomi2g04099 340 SUPERFAMILY ARM repeat 18 333 IPR016024 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04099 K08272 calcium binding protein 39
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:46629205 Lomi3g00781 Lomi-Chr3:6361827 dispersed
Lomi Lomi-Chr2:46629205 Lomi8g02178 Lomi-Chr8:29758974 transposed