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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04103 ATGGAGGAGGCGGTAACTATGACAAGTAACAGTAGTAATACTAGCACTGCTAGTTGTTTTTCTTACTTTTCTGTGGCTGCTGATGGTCATAGTCAGGTGGTTCCGGTGACATTGTTTGTGGCGGTACTCTGTTTGTGTTTAGTTATTGGACACTTACTTGATGAATATCGCTGGGTTAACGAGTCTATCACCGCCATCATCATCGGGTGTGTAGTTGGAACAATAATATTGATAGCAAGCAAATGGAAAAATTCACACTTGCTCAGGTTCAATGAAGAGCTCTTTTTTATTTATTTACTCCCACCAATCATTTTCAACGCTGGATTTCAGGTGAAAAAGAAGCAGTTTTTTCACAACTTTTTGCCCATTATGCTGTTTGGAGTCACTGGTGTTTTCATATCCACATCCATTGTTGCCACCGGTTGCTGGTTGCTGTTTCCAAAATTGGGCTTTAACGGTTTGACTATCAGTGAGTATCTTAGTATAGGGACCATTTTCTCATCTACCGATACTGTATGTACATTACAGGTTTTGAATCAAGATGAGACTCCTTTGCTATACAGTCTAGTTTTTGGTGAAGGAGTTGTAAACGATGCAACATCCGTTGTTTTGTTCAATGCGGTTCGCAAGATTAATGCTAATACACTCGGTGTCAAGGCTGCTCTTCGTATATTTCTAGATTTCTTGTATTTATTTTCTACAAGCACACTTCTTGGTGTTACAGCTGGGCTTTTGGCATCTTATATTCTTAGAGGCTTGGGTTTTGGCAGGCATTCAAGTGTTCGGGAAATTTCGTTGATGATTCTGATTGCATATTTTTCCTACATGTTGGCAGAGTTATTTGAACTCAGTGGAATTCTGACAGTCTTTTTTTCTGGAGTTTTGATGTCACACTATGCATGGCATAATGTAACCGAAAGCTCAAGAATCACAACCAAGAATACTTTTGCAGCCATGTCTTTTATTGCAGAAACGTTCATATTTTTGTATGTGGGAATGGACGCGTTGGACTATGAGAAGTGGAAAATGAGCATATTTAGTTTTTGGACTTCAATGGGCATATACAGCACTGTGATGTTCTTAATCATGCTTGGGCGTGTTGCTTTTGTGATTCCCCTTTCTGTTTTGGCTAATTACATGCATAAAAGTCGTGAGACTTCATTGAAGATCACAGCAAAACACCAGGTAGTAATATGGTGGGCTGGTCTGATGAGAGGTGCTGTCTCTGTCGCTTTAGCATTCAAACAGTTTACTCTCTCTGGTGTGACGCTTGATCCAATCAATGCTACAATGATCACCACTACTATTGTGATCGTGCTATTGAGTACAACTGTATTTGGTTTCTTGACAAGACCACTTATTAGATATCTTCTTCCTCCTAACACAAGTAACAACAACGGTCCATCAAGAACAACATCTCTCAAAGAGGATATGACACTTCCGTTACTTTCTTTTGAAGAATCGGCTTCTGAAAATCTCTCAAGAGCAAAAGAGAATATATCAATGCTAATGGAAAGGCCTGTTTACACAATCCACTCCTACTGGAGGAGGTTCGATGATACTTATATGCGACCTATATTTGGTGGGCCACGTAGCACTGACCTTTCGTAA 1611 39.79 MEEAVTMTSNSSNTSTASCFSYFSVAADGHSQVVPVTLFVAVLCLCLVIGHLLDEYRWVNESITAIIIGCVVGTIILIASKWKNSHLLRFNEELFFIYLLPPIIFNAGFQVKKKQFFHNFLPIMLFGVTGVFISTSIVATGCWLLFPKLGFNGLTISEYLSIGTIFSSTDTVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAVRKINANTLGVKAALRIFLDFLYLFSTSTLLGVTAGLLASYILRGLGFGRHSSVREISLMILIAYFSYMLAELFELSGILTVFFSGVLMSHYAWHNVTESSRITTKNTFAAMSFIAETFIFLYVGMDALDYEKWKMSIFSFWTSMGIYSTVMFLIMLGRVAFVIPLSVLANYMHKSRETSLKITAKHQVVIWWAGLMRGAVSVALAFKQFTLSGVTLDPINATMITTTIVIVLLSTTVFGFLTRPLIRYLLPPNTSNNNGPSRTTSLKEDMTLPLLSFEESASENLSRAKENISMLMERPVYTIHSYWRRFDDTYMRPIFGGPRSTDLS 536
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04103 536 PRINTS Na+-H+ exchanger signature 123 131 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lomi2g04103 536 PRINTS Na+-H+ exchanger signature 94 105 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lomi2g04103 536 PRINTS Na+-H+ exchanger signature 108 122 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lomi2g04103 536 PRINTS Na+-H+ exchanger signature 163 173 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lomi2g04103 536 PANTHER SODIUM-HYDROGEN EXCHANGER 31 531 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Lomi2g04103 536 Pfam Sodium-hydrogen exchanger family 47 454 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lomi2g04103 536 Gene3D - 155 207 - -
Lomi2g04103 536 Coils Coil 486 506 - -
Lomi2g04103 536 NCBIfam sodium-hydrogen exchanger 3 34 494 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04103 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
324193 Lomi2g04103 Lomi1g00525
333284 Lomi1g00525 Lomi2g04103
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:46659126 Lomi5g01941 Lomi-Chr5:30660311 dispersed
Lomi Lomi-Chr1:5005120 Lomi2g04103 Lomi-Chr2:46659126 wgd
Lomi Lomi-Chr11:26848721 Lomi2g04103 Lomi-Chr2:46659126 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00051 LST 48 576 Antiporters gene family AT3G19490 81.006 0.0 818.0
Lomi1g00525 LST 11 525 Antiporters gene family AT5G55470 68.544 0.0 738.0
Lomi1g01010 LST 6 457 Antiporters gene family AT3G51860 67.325 0.0 572.0
Lomi1g01236 LST 58 570 Antiporters gene family AT5G17860 41.324 6.23e-139 415.0
Lomi1g01604 LST 13 443 Antiporters gene family AT2G38170 59.861 5.12e-174 493.0
Lomi1g02123 . 1 385 Antiporters gene family AT5G13490 76.093 0.0 574.0
Lomi1g03038 ACH,LST 67 567 Antiporters gene family AT5G17860 48.919 1.67e-169 491.0
Lomi1g03580 LST 7 584 Antiporters gene family AT2G19600 75.897 0.0 857.0
Lomi2g00812 LST 5 584 Antiporters gene family AT2G19600 75.768 0.0 853.0
Lomi2g01364 ACH,LST 67 567 Antiporters gene family AT5G17860 49.312 2.43e-171 496.0
Lomi2g02723 LST 13 443 Antiporters gene family AT2G38170 60.417 7.49e-177 501.0
Lomi2g03122 LST 58 564 Antiporters gene family AT5G17860 42.391 1.36e-139 416.0
Lomi2g03341 . 138 218 Antiporters gene family AT5G37060 32.099 5.25e-10 52.0
Lomi2g03342 . 773 835 Antiporters gene family AT5G37060 57.143 3.90e-19 78.2
Lomi2g03463 LST 6 457 Antiporters gene family AT3G51860 67.105 0.0 573.0
Lomi2g04103 LST 14 525 Antiporters gene family AT5G55470 69.141 0.0 731.0
Lomi2g04605 LST 48 576 Antiporters gene family AT3G19490 81.903 0.0 828.0
Lomi3g00809 LST 64 436 Antiporters gene family AT1G55730 76.203 0.0 581.0
Lomi3g00984 ACH,LST 38 563 Antiporters gene family AT5G64290 74.144 0.0 781.0
Lomi3g03133 LST 11 534 Antiporters gene family AT3G05030 62.264 0.0 671.0
Lomi3g03178 LST 1 682 Antiporters gene family AT3G62270 79.826 0.0 1133.0
Lomi3g03254 LST 13 479 Antiporters gene family AT3G05030 32.225 1.14e-53 188.0
Lomi4g00034 LST 13 479 Antiporters gene family AT3G05030 32.225 1.90e-54 191.0
Lomi4g00170 LST 1 682 Antiporters gene family AT3G62270 79.826 0.0 1135.0
Lomi4g00259 LST 11 534 Antiporters gene family AT3G05030 62.782 0.0 669.0
Lomi4g02374 ACH,LST 200 294 Antiporters gene family AT5G64290 86.316 4.22e-49 161.0
Lomi4g02566 LST 11 436 Antiporters gene family AT1G55730 68.852 0.0 586.0
Lomi4g03106 . 43 567 Antiporters gene family AT5G17860 41.975 7.34e-140 416.0
Lomi5g00005 ACH 31 440 Antiporters gene family AT1G55730 70.213 0.0 597.0
Lomi5g00040 . 53 566 Antiporters gene family AT5G17860 45.242 5.24e-148 438.0
Lomi5g00110 ACH 1 287 Antiporters gene family AT1G79900 65.529 3.05e-135 383.0
Lomi5g00137 ACH,LST 6 620 Antiporters gene family AT1G15460 72.195 0.0 936.0
Lomi5g00321 ACH 8 404 Antiporters gene family AT5G33320 61.463 2.84e-159 453.0
Lomi5g01229 . 21 566 Antiporters gene family AT5G51710 76.557 0.0 853.0
Lomi5g01751 ACH,LST 13 543 Antiporters gene family AT3G05030 75.706 0.0 830.0
Lomi5g01941 LST 12 529 Antiporters gene family AT5G55470 69.498 0.0 741.0
Lomi5g01986 ACH,LST 1 387 Antiporters gene family AT5G54800 72.658 0.0 558.0
Lomi5g02137 . 200 299 Antiporters gene family AT1G55730 54.0 2.83e-31 112.0
Lomi5g02366 ACH,LST 1 563 Antiporters gene family AT5G64290 74.648 0.0 825.0
Lomi5g02927 ACH,LST 42 590 Antiporters gene family AT2G19600 80.541 0.0 859.0
Lomi6g00221 ACH,LST 1 686 Antiporters gene family AT3G62270 75.793 0.0 1086.0
Lomi6g00222 ACH,LST 4 404 Antiporters gene family AT5G33320 64.878 6.39e-175 493.0
Lomi6g00344 ACH,LST 47 388 Antiporters gene family AT1G61800 79.191 0.0 554.0
Lomi6g00667 LST 4 656 Antiporters gene family AT5G25430 65.697 0.0 915.0
Lomi6g01314 LST 93 563 Antiporters gene family AT5G64290 69.639 0.0 691.0
Lomi6g01340 LST 33 1142 Antiporters gene family AT2G01980 63.523 0.0 1368.0
Lomi6g02299 . 432 521 Antiporters gene family AT5G55470 64.444 4.64e-35 123.0
Lomi6g02323 ACH,LST 13 543 Antiporters gene family AT3G05030 71.94 0.0 803.0
Lomi6g02368 LST 10 298 Antiporters gene family AT5G17400 36.735 1.62e-57 186.0
Lomi6g02606 ACH,LST 30 278 Antiporters gene family AT1G79900 34.173 1.53e-43 149.0
Lomi6g02672 ACH,LST 1 795 Antiporters gene family AT4G23700 65.578 0.0 1038.0
Lomi6g02820 . 240 322 Antiporters gene family AT2G13620 72.289 9.01e-35 123.0
Lomi7g00266 ACH,LST 140 388 Antiporters gene family AT1G61800 87.55 1.02e-159 446.0
Lomi7g00377 LST 4 404 Antiporters gene family AT5G33320 65.037 3.43e-177 498.0
Lomi7g00378 ACH,LST 1 687 Antiporters gene family AT3G62270 75.108 0.0 1072.0
Lomi7g00706 LST 4 656 Antiporters gene family AT5G25430 66.055 0.0 919.0
Lomi7g01155 LST 93 563 Antiporters gene family AT5G64290 70.064 0.0 693.0
Lomi7g01177 LST 19 234 Antiporters gene family AT1G14660 70.833 2.70e-97 300.0
Lomi7g02072 ACH,LST 13 543 Antiporters gene family AT3G05030 73.308 0.0 812.0
Lomi7g02113 LST 10 298 Antiporters gene family AT5G17400 37.075 1.51e-58 189.0
Lomi7g02266 ACH,LST 30 283 Antiporters gene family AT1G79900 34.276 2.79e-44 151.0
Lomi7g02414 ACH,LST 1 795 Antiporters gene family AT4G23700 65.075 0.0 1033.0
Lomi8g00728 ACH,LST 1 825 Antiporters gene family AT3G53720 65.538 0.0 1009.0
Lomi8g00729 ACH,LST 62 566 Antiporters gene family AT5G17860 47.082 3.91e-161 468.0
Lomi8g00779 LST 1 384 Antiporters gene family AT5G13490 77.604 0.0 565.0
Lomi8g00780 LST 1 384 Antiporters gene family AT5G13490 77.344 0.0 564.0
Lomi8g00896 LST 75 381 Antiporters gene family AT3G01550 75.0 2.42e-159 452.0
Lomi8g01278 LST 132 545 Antiporters gene family AT1G08960 67.749 0.0 553.0
Lomi8g01803 LST 1 385 Antiporters gene family AT5G13490 78.961 0.0 600.0
Lomi9g00161 ACH 1 296 Antiporters gene family AT1G79900 69.281 2.20e-146 412.0
Lomi9g00416 ACH,LST 1 682 Antiporters gene family AT3G62270 76.556 0.0 1085.0
Lomi10g00611 ACH,LST 1 825 Antiporters gene family AT3G53720 63.724 0.0 971.0
Lomi10g00613 ACH,LST 44 567 Antiporters gene family AT5G17860 46.328 6.72e-162 471.0
Lomi10g00672 ACH,LST 1 384 Antiporters gene family AT5G13490 77.083 0.0 563.0
Lomi10g00674 LST 1 384 Antiporters gene family AT5G13490 77.865 0.0 567.0
Lomi10g00846 LST 75 381 Antiporters gene family AT3G01550 70.779 7.16e-154 438.0
Lomi10g00847 . 41 383 Antiporters gene family AT3G01550 68.895 7.77e-160 453.0
Lomi10g01188 . 471 776 Antiporters gene family AT1G16380 46.926 1.13e-87 276.0
Lomi10g01189 . 276 413 Antiporters gene family AT1G79400 36.429 5.41e-23 92.8
Lomi10g01190 . 13 252 Antiporters gene family AT1G79400 37.008 4.31e-37 136.0
Lomi10g01401 LST 16 545 Antiporters gene family AT1G08960 61.525 0.0 627.0
Lomi10g01530 . 81 410 Antiporters gene family AT5G46110 76.316 0.0 543.0
Lomi10g02205 LST 1 384 Antiporters gene family AT5G13490 79.688 0.0 609.0
Lomi11g00124 ACH,LST 6 619 Antiporters gene family AT1G15460 73.171 0.0 946.0
Lomi11g00996 . 21 566 Antiporters gene family AT5G51710 76.374 0.0 853.0
Lomi11g01456 ACH 1 795 Antiporters gene family AT4G23700 64.08 0.0 1009.0
Lomi11g01558 ACH 30 283 Antiporters gene family AT1G79900 32.155 3.05e-41 143.0
Lomi11g01727 LST 13 543 Antiporters gene family AT3G05030 75.706 0.0 832.0
Lomi11g01844 LST 2 529 Antiporters gene family AT5G55470 69.508 0.0 752.0
Lomi11g01872 ACH,LST 1 387 Antiporters gene family AT5G54800 72.911 0.0 560.0
Lomi11g02153 ACH,LST 1 563 Antiporters gene family AT5G64290 74.868 0.0 825.0
Lomi11g02677 ACH,LST 48 584 Antiporters gene family AT2G19600 81.868 0.0 858.0
Lomi12g01740 . 6 302 Antiporters gene family AT5G17400 75.758 4.53e-168 466.0
Lomi12g01882 ACH,LST 1 689 Antiporters gene family AT3G62270 75.215 0.0 1069.0
Lomi12g02134 . 1 296 Antiporters gene family AT1G79900 68.954 2.67e-145 409.0
Lomi12g02154 ACH 10 675 Antiporters gene family AT1G15460 67.262 0.0 924.0
Lomi12g02245 ACH 26 440 Antiporters gene family AT1G55730 70.588 0.0 591.0
Lomi13g00660 . 23 539 Antiporters gene family AT2G47600 69.407 0.0 730.0
Lomi13g00695 . 12 534 Antiporters gene family AT3G05030 62.977 0.0 672.0
Lomi13g00778 ACH 6 448 Antiporters gene family AT3G51860 62.306 8.60e-179 506.0
Lomi13g00879 LST 145 229 Antiporters gene family AT1G79900 33.333 1.04e-10 54.7
Lomi13g00896 ACH,LST 1 410 Antiporters gene family AT5G46110 79.661 0.0 635.0
Lomi13g00994 ACH 12 810 Antiporters gene family AT2G13620 71.715 0.0 1152.0
Lomi13g01219 . 24 801 Antiporters gene family AT3G52080 44.159 0.0 694.0
Lomi13g01614 ACH 1 385 Antiporters gene family AT5G13490 75.844 0.0 564.0
Lomi13g01619 LST 1 557 Antiporters gene family AT5G12860 81.514 0.0 892.0
Lomi13g01833 ACH 1 818 Antiporters gene family AT3G53720 58.987 0.0 863.0
Lomi13g01909 . 61 818 Antiporters gene family AT3G53720 57.441 0.0 764.0
Lomi14g00295 LST 1 410 Antiporters gene family AT5G46110 78.45 0.0 632.0
Lomi14g00310 LST 30 283 Antiporters gene family AT1G79900 28.214 1.20e-32 120.0
Lomi14g00550 . 90 539 Antiporters gene family AT2G47600 70.485 0.0 649.0
Lomi15g00478 LST 1 557 Antiporters gene family AT5G12860 81.866 0.0 895.0