AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04105 ATGCTTCAACTTGGTGGTTGTCAAACTACTAGTAGTAATACTATAAATGTAACAACTTTTTTATCTTCATCATCCTCCTTGTGCTTCAAACCATCTAGGACTCCCCGGCGATTGGGATGTCGGCGTTCGGGCGTATGCTGTTCGTTTTCATCAATGGAGTCTGCAAAGATTAAGGTTGTCGGTGTCGGTGGTGGTGGCAACAATGCCGTCAATCGCATGATTGGTAGCGGTTTGCAGGGTGTTGATTTTTACGCCATCAACACGGATTCTCAAGCACTTGTTCAATCTGTTGCACAAAATCCAATTCAAATCGGAGAGCTTTTGACTCGTGGACTTGGTACGGGTGGCAATCCGCTTTTAGGAGAACAGGCCGCAGAGGAATCAAAGGAAGCCATTGGTAATGCTCTTAAAGGATCGGATCTTGTGTTCATAACAGCAGGAATGGGTGGCGGTACAGGCTCTGGTGCTGCTCCTGTTGTAGCCCAGATTGCAAAGGAAGCAGGATATTTAACTGTTGGTGTCGTCACCTACCCATTCAGCTTTGAAGGACGCAAAAGATCAGTGCAGGCTTTGGAGGCTATTGAGAAGCTGCAAAAGAATGTTGACACGCTTATAGTGATCCCAAATGATCGTTTACTGGATATTGCTGATGAGCAGACACCGCTTCAGGATGCTTTTCTTCTTGCTGATGATGTGCTCCGCCAAGGAGTTCAAGGAATTTCAGATATAATTACGATACCTGGGCTGGTGAATGTGGACTTTGCTGATGTTAAAGCGGTGATGAAAGATTCTGGAACTGCAATGCTTGGCGTCGGGGTTTCCTCAAGCAAAAATCGAGCTGAAGAAGCAGCTGAACAAGCAACTCTTGCACCTTTAATTGGTTCATCGATCCAATCTGCTACTGGAGTAGTTTATAACATTACTGGGGGGAAAGACATAACCCTGCAAGAAGTCAATAGGGTGTCGCAGGTGGTAACGAGCTTGGCAGATCCCTCAGCAAACATTATATTTGGGGCAGTTGTGGATGAGAGATACAATGGGGAGATCCATGTGACTATTGTTGCTACAGGATTTGCACAGTCGTTTCAGAAATCTCTTCTGGCTGATCCTAAAGGAGCAAAACTAGTCGATAGAAATCAAGAAGCTGTACAACCTTCAATTTCCCCAAAATCTTTAACCATGCCATCTGCTACTCCATCTCGCTCTAGGAAACTTTTCTTTTAA 1224 44.93 MLQLGGCQTTSSNTINVTTFLSSSSSLCFKPSRTPRRLGCRRSGVCCSFSSMESAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALVQSVAQNPIQIGELLTRGLGTGGNPLLGEQAAEESKEAIGNALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSVQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDERYNGEIHVTIVATGFAQSFQKSLLADPKGAKLVDRNQEAVQPSISPKSLTMPSATPSRSRKLFF 407
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04105 407 MobiDBLite consensus disorder prediction 384 407 - -
Lomi2g04105 407 SUPERFAMILY Tubulin C-terminal domain-like 250 365 IPR008280 -
Lomi2g04105 407 ProSitePatterns FtsZ protein signature 2. 140 161 IPR020805 GO:0005525(InterPro)
Lomi2g04105 407 FunFam Cell division protein FtsZ 1, chloroplastic 221 358 - -
Lomi2g04105 407 Pfam Tubulin-FtsZ family, GTPase domain 56 216 IPR003008 GO:0005525(InterPro)
Lomi2g04105 407 Pfam FtsZ family, C-terminal domain 265 358 IPR024757 -
Lomi2g04105 407 CDD FtsZ-type1 72 357 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Lomi2g04105 407 MobiDBLite consensus disorder prediction 384 400 - -
Lomi2g04105 407 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 149 155 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lomi2g04105 407 Gene3D - 264 369 IPR037103 -
Lomi2g04105 407 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 46 382 IPR045061 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
Lomi2g04105 407 SMART Tubulin-C-4 250 367 IPR018316 -
Lomi2g04105 407 PRINTS Cell division protein FtsZ signature 141 161 IPR003008 GO:0005525(InterPro)
Lomi2g04105 407 PRINTS Cell division protein FtsZ signature 232 254 IPR003008 GO:0005525(InterPro)
Lomi2g04105 407 PRINTS Cell division protein FtsZ signature 169 190 IPR003008 GO:0005525(InterPro)
Lomi2g04105 407 PRINTS Cell division protein FtsZ signature 255 276 IPR003008 GO:0005525(InterPro)
Lomi2g04105 407 SUPERFAMILY Tubulin nucleotide-binding domain-like 55 251 IPR036525 -
Lomi2g04105 407 Hamap Cell division protein FtsZ [ftsZ]. 52 372 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Lomi2g04105 407 Gene3D Tubulin-FtsZ, GTPase domain 47 263 IPR036525 -
Lomi2g04105 407 SMART Tubulin-4 56 248 IPR003008 GO:0005525(InterPro)
Lomi2g04105 407 NCBIfam cell division protein FtsZ 52 366 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Lomi2g04105 407 ProSitePatterns FtsZ protein signature 1. 87 121 IPR020805 GO:0005525(InterPro)
Lomi2g04105 407 FunFam Cell division protein FtsZ 1, chloroplastic 49 263 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04105 K03531 cell division protein FtsZ
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Event-related genes

Select Gene_1 Gene_2 Event_name
324191 Lomi2g04105 Lomi1g00522
333286 Lomi1g00522 Lomi2g04105
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:46678892 Lomi4g00711 Lomi-Chr4:8162818 dispersed
Lomi Lomi-Chr1:4988897 Lomi2g04105 Lomi-Chr2:46678892 wgd