Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi2g04106	ATGAGCGTTGTAGAGAAAGAAACCATTCAAGTGGTGGCACAAACCGTCGGTGTTTCCAATTTATCGCCGGATGTTTTGCCTTCTCTCGCTGCAGATATCGAATATCGTCTTCGCGAGATCATGCAGGAGGCTATAAAATGTATGCATCATTCAAAGCGAACTGCTATGACTTCAGATGATGTGGATACTGCCCTTCAAATAAGAAGAATGGAGCCGTTATACGTGGGATCCGGGAATTCTTTGCGGTTCAAAAGAGCTGCCAGGAGTAGGGATTTGTTCTATGTTGAGAGCAAGGATGTGGAACTTAGAGAGGTGATAGAAGCCCCGCTTCCAAAAGCGCCTCTAGATACTGCAGTTGTCAATCACTGGCTCGCTATTGAAGGAGTACAACCTGCTATTCCTGAAAATGCTCCCCTTGAAGTACTTTTAGCCCCTATTGATAATAAGAAACCTGATAGCAAAGAAGACGGGGTTTCTGGTGGCGACAGTAAAACTCCTGTGAAGCATGTGCTCTCGATAGAGCTTCAGCTTTACTTTGAAAAGGTCACAGACCTCACTGTAAGTCGGTCAAACTCCATCATCTTTGACAAAGCATTGTTGAGCTTAGCTACGGATGCAGGGCTCCATCCGTTGATTCCTTATTTTATATATTTTGTTGCTGAAGAGGTCACTCGTAATTTAAACAACTTCCAGCTTCTTTTTGCTTTAATGCGCCTTGTCCGGAGTCTTGTAGAGAATCCACACCTGCACATTGAACCATATCTGCACCAACTTATGCCATCTGTAATGACCTGTCTTGTTGCAAAAAGCCTAGGAAATAAGTTCACCGATAACCACTGGGAACTTAGAAACTTCACAGCGAACCTGGTTGGCTTAATATGTGGAAGGTTTGGGTATGGGTATCATAATCTCCATTTACGTGTGAGTAGGACTCTTCTTCATGCTTTTATGGATCCTACAAAAGCATTTCCCCAGCATTATGGTGCTATAAAAGGGATTACCGCCCTTGGATCAAACGTGGTTCGGCTGCTTATCCTACCAAATCTTGATGCATATCTACAATTTATAGAACCAGAAATGCAACTAGAGAAGCAAAAGAATGAGAGCAGGAGACAGGAGGCCTGGCGAGTCCATGGTGCCTTAATGTGTGCAGCTGGACTTTGTATTTACAGTCAACTTAAGATGATTCCCAATTTCTTATCTCCACCAACGCATGGCATCTGGAAGAGGAATGGAAAATTAGGGACAGCAAATCCAAACAAACGGAAGGCGGCAAGTATGAACAACATGATGGAGCAGCCACTTAAAAAAGTAGAAACAGGTGACGGTTCACATTTAGTGAAGGTAGAAATGCAAGGAGGCAGTAGTGGGTTTTCAATTACTCGTGGTGGTTCGGATGTTGGGCTGCATGCACTACCAAGGTTTTTGCCTAATGACAACATGGCAGGTGTCAATGGCAGGAGGGATAAGTTTGGTCTTGCTCAAATATCATCAGTGGCAGTATCCAGAGCATGGAAAAAGGAAATAAATGCAGGACACTTGCTTCCTAAACTCTATGATCTTTTTGGTCAAAGCATGTTTCCCTTTGTACCTTCCCCTGAATTGTGTAATTTACACCTTTGA	1623	43.44	MSVVEKETIQVVAQTVGVSNLSPDVLPSLAADIEYRLREIMQEAIKCMHHSKRTAMTSDDVDTALQIRRMEPLYVGSGNSLRFKRAARSRDLFYVESKDVELREVIEAPLPKAPLDTAVVNHWLAIEGVQPAIPENAPLEVLLAPIDNKKPDSKEDGVSGGDSKTPVKHVLSIELQLYFEKVTDLTVSRSNSIIFDKALLSLATDAGLHPLIPYFIYFVAEEVTRNLNNFQLLFALMRLVRSLVENPHLHIEPYLHQLMPSVMTCLVAKSLGNKFTDNHWELRNFTANLVGLICGRFGYGYHNLHLRVSRTLLHAFMDPTKAFPQHYGAIKGITALGSNVVRLLILPNLDAYLQFIEPEMQLEKQKNESRRQEAWRVHGALMCAAGLCIYSQLKMIPNFLSPPTHGIWKRNGKLGTANPNKRKAASMNNMMEQPLKKVETGDGSHLVKVEMQGGSSGFSITRGGSDVGLHALPRFLPNDNMAGVNGRRDKFGLAQISSVAVSRAWKKEINAGHLLPKLYDLFGQSMFPFVPSPELCNLHL	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi2g04106	540	CDD	TAF6C	168	384	IPR011442	GO:0006367(InterPro)
	Lomi2g04106	540	Pfam	TATA box binding protein associated factor (TAF)	1	65	IPR004823	-
	Lomi2g04106	540	PANTHER	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	3	533	IPR037796	GO:0000124(InterPro)\|GO:0003713(PANTHER)\|GO:0005669(InterPro)\|GO:0005669(PANTHER)\|GO:0006367(InterPro)\|GO:0016251(PANTHER)\|GO:0016251(InterPro)\|GO:0046695(InterPro)\|GO:0051123(PANTHER)
	Lomi2g04106	540	SUPERFAMILY	Histone-fold	2	66	IPR009072	GO:0046982(InterPro)
	Lomi2g04106	540	Gene3D	-	167	371	IPR046344	GO:0006367(InterPro)
	Lomi2g04106	540	Gene3D	Histone, subunit A	1	67	IPR009072	GO:0046982(InterPro)
	Lomi2g04106	540	FunFam	Transcription initiation factor TFIID subunit 6	168	364	-	-
	Lomi2g04106	540	Pfam	TAF6 C-terminal HEAT repeat domain	167	349	IPR011442	GO:0006367(InterPro)
	Lomi2g04106	540	SUPERFAMILY	ARM repeat	198	385	IPR016024	-
	Lomi2g04106	540	SMART	TAF-cls	2	68	IPR004823	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi2g04106	K03131	transcription initiation factor TFIID subunit 6

Event-related genes

Select	Gene_1	Gene_2	Event_name
	324190	Lomi2g04106	Lomi1g00521
	333287	Lomi1g00521	Lomi2g04106

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr3:6316356	Lomi2g04106	Lomi-Chr2:46681295	transposed
	Lomi	Lomi-Chr1:4985458	Lomi2g04106	Lomi-Chr2:46681295	wgd