AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04109 ATGTTGAGGATTAAGAGGGTTCCTACAATTCTTTCTAATTACCAAAAGGAGGATGCTGAGGAAAGTGGTGGTGGCGGTGGTTGTGGCCGTAATTGTCTCAGAAACTGTTGCCTATCAGGGGCTAAGCTACCGTTGTATGCTTTTCCAAAATCCAACAAGGTTGAATCGTGTGACAAAAACGAGTTTCCTTTTGCTTTCTTGGATTCCCTTCTACTTGGAGAGTGGGAGGATCGAATGGAGAAAGGACTTTTTCGCTACGATGTTACTGCCTGTGAAACAAAGGTGATTCCGGGTGAACATGGCTTTGTTGCTCAGCTAAATGAGGGTCGCCACCTCAAAAAGCGTCCAACTGAGTTCCAAGTTGATAAGGTGCTGCAGCCTTTTGATGATAACAAGTTCAACTTCACCAAAGTTGGGCAGGAAGAGGTACTCTTCCAGTTTGAAGCAAGTGAAGATGGTGAAGTCCACTTCTATCCAAATGCTCCAATTAATGATGATAAGTCACCAAGCTTTGTTGCCATTAATGTTAGTCCCATTGAATATGGGCATGTTCTTCTGATTCCTCGAATTCTTGAACGCTTACCTCAGAGGATTGACCATGAAAGCTTATTGCTTGCACTGTACATGGCACATGAGGCTGGAAGTCCTTACTTTCGTCTAGGCTACAATAGCTTGGGTGCATTTGCTACTATCAATCACCTTCATTTTCAGGCTTACTACTTGGCTGTGCCGTTTCCAATAGAGAAAGCTGCCACTAGAAAGATTACTGACTTCAGTGGTAGGATCGAGATTTCTGAGATTCTCAACTATCCGGTTAAAGGTCTCGTGTTTGAAGGTGGGAATTCTCTTAAGGATCTATCCAACGCTGTCGCTGCCACCTGCATATGCCTTCAAGATACCAACATACCGTACAATGTGCTAATTTCAGAATCTGGGAGACGCATCTTTGTCCTTCCACAGTGTTATGCAGAGAAGCAGGCTCTAGGAGAAGTGAGTGCTGAGCTTCTCGATACTCAGGTGAACCCTGCTGTGTGGGAAATCAGTGGACACATGGTGTTGAAACGGAAGGAAGACTATGAAGGAGCATCTGAGGAAAAAGCTTGGAGACTTCTTGCAGAGGTTTCTTTGTCTGATGAAAGGTTTCGGGAGGTGATGGTTATTATTTTTGAGGCCATTTCATGTGCTGTTATTGAGAAGAAATTGAGCGAGAATGAGCAAGATGTTGATGAAGCTGGCGGTCTTAACAATGATCCGCGTGCAACTACCGTGACTGGCAAACAAGAATGCCTAGTTCAAAACTAG 1302 44.24 MLRIKRVPTILSNYQKEDAEESGGGGGCGRNCLRNCCLSGAKLPLYAFPKSNKVESCDKNEFPFAFLDSLLLGEWEDRMEKGLFRYDVTACETKVIPGEHGFVAQLNEGRHLKKRPTEFQVDKVLQPFDDNKFNFTKVGQEEVLFQFEASEDGEVHFYPNAPINDDKSPSFVAINVSPIEYGHVLLIPRILERLPQRIDHESLLLALYMAHEAGSPYFRLGYNSLGAFATINHLHFQAYYLAVPFPIEKAATRKITDFSGRIEISEILNYPVKGLVFEGGNSLKDLSNAVAATCICLQDTNIPYNVLISESGRRIFVLPQCYAEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKEDYEGASEEKAWRLLAEVSLSDERFREVMVIIFEAISCAVIEKKLSENEQDVDEAGGLNNDPRATTVTGKQECLVQN 433
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04109 433 PANTHER GDP-D-GLUCOSE PHOSPHORYLASE 1 3 394 IPR026506 GO:0005737(PANTHER)|GO:0006006(PANTHER)|GO:0080048(InterPro)|GO:0080048(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04109 K14190 GDP-L-galactose phosphorylase [EC:2.7.7.69]
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Event-related genes

Select Gene_1 Gene_2 Event_name
324188 Lomi2g04109 Lomi1g00519
333289 Lomi1g00519 Lomi2g04109
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:46721647 Lomi7g00243 Lomi-Chr7:2402856 dispersed
Lomi Lomi-Chr3:935952 Lomi2g04109 Lomi-Chr2:46721647 transposed
Lomi Lomi-Chr1:4946030 Lomi2g04109 Lomi-Chr2:46721647 wgd