AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04110 ATGACGCCGTCATCATCATCATCACGCGACGATTCACAATCGATCGTCTACACTTACGGCCTCGACATCATCAAGGTATCCGGCGACATCGAAACAACAACCGATCTTCAAATGAACATGCAACATTCCGTTGCCGCCGTTGAATCCATATTGAACTACAAATTCAAGGATAAAAGTTTATTGGAAGAAGCGTTAACACATTCTTCGTTTACCGATGGTTCGTGTTACCAACGACTTGAGTTTTTAGGTGACGCTGTTATCGGTCTTGCGGTATCTAATTTTGTTTACTTGAATTACCCTCACCTTGACCCCGGTCAACTCTCCCTTCTTCGTGCTGCTAATATTAGTACCGAAAAACTCGCTAGGGTTGCTGTTCAACATCAACTGTACAAATATGTTCGCCACAATGCCGCCGTTCTCAGTGACAAGGTCAGAGAATTTGTAGTTGCTGTTAAGGAAGAAGAAGATACTGTTGTCCACGGAGGACTGATGAAAGCCCCGAAAGTACTTGCAGATATTGTGGAATCGGTGGTTGCTGCTGTTTATGTTGACTGTGGATTCAACTTGCAAATGCTGTGGCTGATAATCAGAGAGCTGCTTGAACCTATAGTGATGCTAGATGTACTTGAGAAACAACCACAACCTATTACAATGCTTTTTGAGGCATGTCAGAAAGAAGGGAAGCAGCTTGATATAAGACATCGGAGGAAAGGTGAGAAAGATATAGCAAGTGTGTATATAGATGGGACGTTTGTTGCTTCCGGCTCTTCAGAGAATAAAGAAAATGCAAAGCTTCATGCAGCTGAGGCAGCTTTGTCTAAGTTGAAAACTGATGATGCGACGATTACACATACTTTTTGTGGTTTTAATGAGGCCGCTGATATTGAAGGTGCCAAAAAGAAAGTACACGAGCTTTGCGATAAAAAGAAGTGGGGGAAGCCCAGTTACAGAGTTGATCAAGAGTTGGGTCCTGCGCATGATAGAAGATACATATCATCTGTTCAAGTTGAAGTTTCTGATAAGATTTTCGTAGTGACAGGAAAAGAGAGGTCTAGAGTAAAGGATGCCGAGAGTTCTGCGGCGTCAGTGATGTTTTGTGCTCTGCGAGAATCTGGATATGTATGA 1125 42.84 MTPSSSSSRDDSQSIVYTYGLDIIKVSGDIETTTDLQMNMQHSVAAVESILNYKFKDKSLLEEALTHSSFTDGSCYQRLEFLGDAVIGLAVSNFVYLNYPHLDPGQLSLLRAANISTEKLARVAVQHQLYKYVRHNAAVLSDKVREFVVAVKEEEDTVVHGGLMKAPKVLADIVESVVAAVYVDCGFNLQMLWLIIRELLEPIVMLDVLEKQPQPITMLFEACQKEGKQLDIRHRRKGEKDIASVYIDGTFVASGSSENKENAKLHAAEAALSKLKTDDATITHTFCGFNEAADIEGAKKKVHELCDKKKWGKPSYRVDQELGPAHDRRYISSVQVEVSDKIFVVTGKERSRVKDAESSAASVMFCALRESGYV 374
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04110 374 Pfam Double-stranded RNA binding motif 215 275 IPR014720 -
Lomi2g04110 374 SMART DRBM-3 298 369 IPR014720 -
Lomi2g04110 374 SMART DRBM-3 215 276 IPR014720 -
Lomi2g04110 374 ProSitePatterns Ribonuclease III family signature. 77 85 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lomi2g04110 374 Pfam Ribonuclease III domain 77 186 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lomi2g04110 374 CDD RIBOc 59 204 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lomi2g04110 374 Hamap Ribonuclease 3 [rnc]. 47 272 IPR011907 GO:0003723(InterPro)|GO:0004525(InterPro)|GO:0006364(InterPro)
Lomi2g04110 374 Gene3D - 210 284 - -
Lomi2g04110 374 PANTHER DICER-RELATED 35 336 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Lomi2g04110 374 SUPERFAMILY dsRNA-binding domain-like 168 276 - -
Lomi2g04110 374 FunFam Endoribonuclease dicer-like 1 38 207 - -
Lomi2g04110 374 Gene3D - 296 370 - -
Lomi2g04110 374 ProSiteProfiles Ribonuclease III family domain profile. 44 186 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lomi2g04110 374 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 297 370 IPR014720 -
Lomi2g04110 374 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 297 368 - -
Lomi2g04110 374 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 214 277 IPR014720 -
Lomi2g04110 374 SUPERFAMILY dsRNA-binding domain-like 298 372 - -
Lomi2g04110 374 Gene3D Ribonuclease III domain 32 206 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Lomi2g04110 374 SMART riboneu5 59 209 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lomi2g04110 374 SUPERFAMILY RNase III domain-like 39 204 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04110 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1665291 Lomi2g04110 Lomi-Chr2:46735595 dispersed
Lomi Lomi-Chr2:46735595 Lomi2g04482 Lomi-Chr2:49901511 dispersed
Lomi Lomi-Chr2:46735595 Lomi13g02072 Lomi-Chr13:29470491 transposed