AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04113 ATGGTAATACTTCACTTGCCTTCCATCCAAGTCTGTTGTTTGACAGACAAGAAGCATACACATTCTTCATTGAAGTTTGGGGAATCAAATTCAAGAACAACAACTTACAAAAGAGGTTCTTTTCATCAAGAACGCAAACCCCAGAAGGTGAATCTTGAAATTTCACCTCATAGAGCTGTGTCCGCAGTAAGATTAATGCGGATAGAGTTCGGTGGTGCCTTTGCCGACCTTTTAAACGAGAAAGGGAAGGGGTCAGGTGATAACGAAATGGGATATGTTGAAAGAACTCTTGGGTTTTGCACTCGAGATTTGGATGATAGAGATCTCAGATTGGTAACCGACATTGTTGGAGGGACAATTCGTTGGAGAAAATATCTTGACTATTTGATTTTGTCTTTATGCCATGATCCAAACGTGTTTAGTCGTATGGAACCTCTACTCTTACAGATTCTTCGGATAGGATTCTATGAGATTGTAAAGCTCGATGTCCCTTCATATGCTGTTGTAGATGAGAATGTGCAGCTAGCCAAAACTGCCCTTAGGCCGGGTGCTGGTAACATGGTCAATGGGATTCTGAGGAAGCTAGTTATGCTTAAGGAAAGTAACTCTCTTCCTTCACCTCAACTGGAAGGTGATGATCGTGCACAAGCACGAGCTCTTGCTACTCTTTATTCTCATCCAGTTTGGATGGTGAGGCGTTGGATAAAATACCTTGGACGTGAAGAAGCTGTTAAGCTGATGATGTGGAATAACAGTGATCCCAGTTTTAGTCTGAGGGCTAATAGAGGAAAAGGTTTTACACGATCGGAGCTCGTGTCACGACTTGAAACATTAGAGGTACCCTATGAGCTCTCTCCTCACCTGGATGATTTTGTTCGTATCAGTACGGGACTGCAGAGTGTTATACAAGATGGGCTACTAAAAGAAGGTTTATGTTCTGTCCAAGATGAAAGTGCAGGTTTGGTGGTTTCCATTCTTGACCCACAACCTGGGGAGACCATAATTGACTGTTGTGCTGCTCCTGGAGGGAAGACGCTCTTCATGGCGGCCTGCTTGAATGGCCACGGAATGGTAACTGCAATTGACATAAATAAAGGGCGTTTGAGGATCCTCAAGGAGACAGCCAAGCTGCAAAAACTTAATAATGTCATCACTACCGTTCACGCTGATCTTCGTGAATTTCCTGAGAATAATCATGTGGCCTATGATAAAGTGTTGCTGGATGCACCTTGTTCTGGACTTGGTGTTCTTTCCAAGAGAGCAGACTTACGCTGGAATCGGAAGTCGGAAGATATGGAAGAACTTAAAAGTTTGCAAGATGAACTTCTTGATGCTGCTTCCATCTTGGTAAAACCTGGTGGTGTGCTAGTATACAGCACTTGTTCAATTGATCCTGAAGAAAATGAAGACAGGGTAGCTGCATTTCTTCTCAGGCATCAGGAATACAGCATAGATTCTGCAAAGAGATACACATCACCTGAATTTTTGACAGATGAGGGTTACTATTTCTCTAGCCCTGTGAAGCATTCTCTTGATGGTGCCTTTGCAGCACGTCTCGTTCGTTGCACTTGA 1572 43.32 MVILHLPSIQVCCLTDKKHTHSSLKFGESNSRTTTYKRGSFHQERKPQKVNLEISPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGDNEMGYVERTLGFCTRDLDDRDLRLVTDIVGGTIRWRKYLDYLILSLCHDPNVFSRMEPLLLQILRIGFYEIVKLDVPSYAVVDENVQLAKTALRPGAGNMVNGILRKLVMLKESNSLPSPQLEGDDRAQARALATLYSHPVWMVRRWIKYLGREEAVKLMMWNNSDPSFSLRANRGKGFTRSELVSRLETLEVPYELSPHLDDFVRISTGLQSVIQDGLLKEGLCSVQDESAGLVVSILDPQPGETIIDCCAAPGGKTLFMAACLNGHGMVTAIDINKGRLRILKETAKLQKLNNVITTVHADLREFPENNHVAYDKVLLDAPCSGLGVLSKRADLRWNRKSEDMEELKSLQDELLDAASILVKPGGVLVYSTCSIDPEENEDRVAAFLLRHQEYSIDSAKRYTSPEFLTDEGYYFSSPVKHSLDGAFAARLVRCT 523
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04113 523 CDD AdoMet-MTases 333 459 - -
Lomi2g04113 523 PRINTS Viridiplantae FMU-related RCMT signature 63 86 IPR023268 -
Lomi2g04113 523 PRINTS Viridiplantae FMU-related RCMT signature 87 103 IPR023268 -
Lomi2g04113 523 PRINTS Viridiplantae FMU-related RCMT signature 203 216 IPR023268 -
Lomi2g04113 523 PRINTS Viridiplantae FMU-related RCMT signature 480 492 IPR023268 -
Lomi2g04113 523 PRINTS RNA (C5-cytosine) methyltransferase signature 453 469 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Lomi2g04113 523 PRINTS RNA (C5-cytosine) methyltransferase signature 306 320 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Lomi2g04113 523 PRINTS RNA (C5-cytosine) methyltransferase signature 335 345 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Lomi2g04113 523 PRINTS RNA (C5-cytosine) methyltransferase signature 403 415 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Lomi2g04113 523 PRINTS RNA (C5-cytosine) methyltransferase signature 504 521 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Lomi2g04113 523 FunFam Ribosomal RNA small subunit methyltransferase B 55 205 - -
Lomi2g04113 523 NCBIfam 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 102 520 IPR004573 GO:0006364(InterPro)|GO:0008649(InterPro)
Lomi2g04113 523 Gene3D Vaccinia Virus protein VP39 320 523 IPR029063 -
Lomi2g04113 523 Gene3D - 60 217 IPR035926 -
Lomi2g04113 523 PANTHER NOP2 YEAST -RELATED NOL1-NOP2-FMU SUN DOMAIN-CONTAINING 106 521 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Lomi2g04113 523 Gene3D Sun protein; domain 3 218 319 - -
Lomi2g04113 523 FunFam Ribosomal RNA small subunit methyltransferase B 318 522 - -
Lomi2g04113 523 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 213 317 - -
Lomi2g04113 523 Pfam 16S rRNA methyltransferase RsmB-F 324 519 IPR049560 -
Lomi2g04113 523 Pfam Methyltr-RsmF-B-like, ferredoxin-like domain 226 296 IPR054728 -
Lomi2g04113 523 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 218 521 IPR029063 -
Lomi2g04113 523 Pfam NusB family 93 195 IPR006027 GO:0003723(InterPro)|GO:0006355(InterPro)
Lomi2g04113 523 SUPERFAMILY NusB-like 93 230 IPR035926 -
Lomi2g04113 523 ProSiteProfiles SAM-dependent MTase RsmB-NOP-type domain profile. 246 522 IPR001678 GO:0008168(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04113 K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr10:15241596 Lomi2g04113 Lomi-Chr2:46784541 dispersed
Lomi Lomi-Chr2:46784541 Lomi3g00434 Lomi-Chr3:3718808 dispersed
Lomi Lomi-Chr2:46784541 Lomi2g03629 Lomi-Chr2:41830967 transposed
Lomi Lomi-Chr2:46784541 Lomi1g00893 Lomi-Chr1:10049491 transposed