AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04116 | ATGGGCAGCATTTCAAAATCAACTACTCGGAATGGCAGCATTTCAAAAGCTAGTGAAAGAACAGATTTTGTTGAAAGTGGAAAAAGTAGTATGTGTAGAGGAAGTACAAGCACTGATTTAAGTGATGAAAGTACTTACAGCACTTTAAGTAGCAGCATCAGCAAACCTCATAAATCAAACGACTCAAGATGGGAAGCAATTCAAGCTGTTAGATTAAAAGATGGGGTTTTGGGTTTGAACCATTTTAGATTGTTAAAAAGATTGGGGTGTGGGGATATCGGCAGTGTGTATCTTTGTGAACTTAGTGGTACGAAATCTCATTTTGCAATGAAGGTGATGGATAAAGTGTCACTTGAGGGTCGTAATAAGTTATTAAGAGTGGAAACAGAAAGGGAAATACTGCAGTCTTTAGATCATCCATTCCTTCCGACTTTGTATACTCATTTTGAGACACATAAATTCTCGTGTTTGGTGATGGAGTTTTGTCCTGGAGGTGATTTACACATGTTAAGACAGAGGCAACCGGGAAAGCGTTTTTGTGAACAAGCTGTCAAGTTTTATGTTGCGGAGATACTTCTTGCCATGGAATACTTGCATATGCTAGGAATAGTCTACCGAGACTTGAAACCAGAAAATGTTCTTGTTAGGGAAGACGGTCACATAATGCTTTCCGACTTTGATCTTTCCCTTCGTTGCTCAGTCAGCCCAACGCTCGTCAATACATCATCTTTAGACAATGAACCCCTTCGAAAGAACTCTGGATATTGTGTACAACCAGCATGCATCAAGCCACCTTCATGTATCCAACCATCATGTGTGGTTCCTACATCTTGTTTCTCTCCAAGACTTTTTAAATCCAAGAAAGACAAGAAATCAAAGTCGGAAATTGGCAACCAAGTTAGCCCGTTACCCGAGCTTATGGCTGAGCCAACTGGGGTCCGGTCAATGTCATTTGTTGGGACCCATGAGTATTTAGCCCCCGAGATTATTAAAAACGAAGGGCATGGAAGTGCGGTAGACTGGTGGACTCTAGGCATCTTTCTATATGAGTTACTTTTTGGTAAAACTCCATTTAAGGGTGCAGGTAATCGTGCCACTTTGACGAATGTTGTTGGACAGCAGTTGAGGTTCCCCGAGTCGCCAGTTGTGAGTTTTTCGGCTAGGGATTTGATTAGAGGCCTGCTAGTGAAAGAACCACGTAACCGATTAGCATACAAGAGAGGAGCTACTGAGATCAAACAACATCCTTTCTTTGAAGGTGTTAATTGGGCATTGATTCGCTGTGCTAGCCCGCCCGAAATCCCAAAGGCAATGGTGTTTGACCGCATTGCTTCTCCAGCGACATCCATTTTGGAGAAAAAGGTTACTGCACTTGCGGTTGCACCTGAGAAGAAGGGCAATTACCTCGAGTTTGATTTCTTTTAA | 1425 | 42.18 | MGSISKSTTRNGSISKASERTDFVESGKSSMCRGSTSTDLSDESTYSTLSSSISKPHKSNDSRWEAIQAVRLKDGVLGLNHFRLLKRLGCGDIGSVYLCELSGTKSHFAMKVMDKVSLEGRNKLLRVETEREILQSLDHPFLPTLYTHFETHKFSCLVMEFCPGGDLHMLRQRQPGKRFCEQAVKFYVAEILLAMEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCSVSPTLVNTSSLDNEPLRKNSGYCVQPACIKPPSCIQPSCVVPTSCFSPRLFKSKKDKKSKSEIGNQVSPLPELMAEPTGVRSMSFVGTHEYLAPEIIKNEGHGSAVDWWTLGIFLYELLFGKTPFKGAGNRATLTNVVGQQLRFPESPVVSFSARDLIRGLLVKEPRNRLAYKRGATEIKQHPFFEGVNWALIRCASPPEIPKAMVFDRIASPATSILEKKVTALAVAPEKKGNYLEFDFF | 474 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04116 | 474 | SMART | serkin-6 | 82 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lomi2g04116 | 474 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
| Lomi2g04116 | 474 | Gene3D | Phosphorylase Kinase; domain 1 | 80 | 165 | - | - | |
| Lomi2g04116 | 474 | ProSiteProfiles | Protein kinase domain profile. | 82 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lomi2g04116 | 474 | FunFam | serine-threonine-protein kinase D6PK-like | 313 | 436 | - | - | |
| Lomi2g04116 | 474 | Pfam | Protein kinase domain | 83 | 235 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lomi2g04116 | 474 | Pfam | Protein kinase domain | 315 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lomi2g04116 | 474 | Gene3D | Transferase(Phosphotransferase) domain 1 | 166 | 241 | - | - | |
| Lomi2g04116 | 474 | CDD | STKc-phototropin-like | 81 | 436 | - | - | |
| Lomi2g04116 | 474 | FunFam | Serine-threonine-protein kinase D6PK-like | 80 | 165 | - | - | |
| Lomi2g04116 | 474 | FunFam | serine-threonine-protein kinase D6PK-like | 166 | 233 | - | - | |
| Lomi2g04116 | 474 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 203 | 215 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lomi2g04116 | 474 | SUPERFAMILY | Protein kinase-like (PK-like) | 54 | 446 | IPR011009 | - | |
| Lomi2g04116 | 474 | PANTHER | FLIPPASE KINASE 1-RELATED | 17 | 441 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Lomi2g04116 | 474 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Lomi2g04116 | 474 | Gene3D | Transferase(Phosphotransferase) domain 1 | 315 | 436 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04116 | K08286 | protein-serine/threonine kinase [EC:2.7.11.-] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr2:46829796 | Lomi4g01987 | Lomi-Chr4:27995450 | dispersed | |
| Lomi | Lomi-Chr1:4851331 | Lomi2g04116 | Lomi-Chr2:46829796 | wgd | |
| Lomi | Lomi-Chr2:46829796 | Lomi5g02363 | Lomi-Chr5:33640173 | wgd | |
| Lomi | Lomi-Chr2:46829796 | Lomi6g00393 | Lomi-Chr6:4314125 | wgd | |
| Lomi | Lomi-Chr2:46829796 | Lomi7g00208 | Lomi-Chr7:2082312 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lomi1g00276 | . | 1 | 469 | AGC Kinase gene family | AT3G14370 | 58.727 | 0.0 | 534.0 | |
| Lomi1g00513 | . | 115 | 586 | AGC Kinase gene family | AT5G47750 | 77.263 | 0.0 | 738.0 | |
| Lomi1g01124 | . | 1 | 517 | AGC Kinase gene family | AT2G20470 | 78.035 | 0.0 | 842.0 | |
| Lomi1g01201 | . | 8 | 421 | AGC Kinase gene family | AT3G25250 | 57.547 | 3.26e-160 | 455.0 | |
| Lomi1g01836 | . | 76 | 765 | AGC Kinase gene family | AT2G44830 | 62.697 | 0.0 | 799.0 | |
| Lomi1g02238 | . | 4 | 424 | AGC Kinase gene family | AT2G34650 | 59.348 | 0.0 | 512.0 | |
| Lomi1g02777 | . | 16 | 408 | AGC Kinase gene family | AT3G20830 | 57.921 | 1.64e-156 | 446.0 | |
| Lomi1g02889 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 63.755 | 0.0 | 544.0 | |
| Lomi1g03833 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 48.374 | 0.0 | 758.0 | |
| Lomi1g04341 | . | 112 | 325 | AGC Kinase gene family | AT3G08730 | 23.077 | 8.92e-08 | 52.8 | |
| Lomi2g00578 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 46.772 | 0.0 | 737.0 | |
| Lomi2g01487 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 64.238 | 0.0 | 542.0 | |
| Lomi2g01586 | . | 17 | 404 | AGC Kinase gene family | AT1G51170 | 57.426 | 1.47e-156 | 446.0 | |
| Lomi2g02086 | . | 4 | 438 | AGC Kinase gene family | AT2G34650 | 59.785 | 0.0 | 518.0 | |
| Lomi2g02503 | . | 66 | 765 | AGC Kinase gene family | AT2G44830 | 62.979 | 0.0 | 801.0 | |
| Lomi2g03188 | . | 8 | 421 | AGC Kinase gene family | AT3G25250 | 55.529 | 2.67e-158 | 450.0 | |
| Lomi2g03289 | . | 1 | 517 | AGC Kinase gene family | AT2G20470 | 78.227 | 0.0 | 843.0 | |
| Lomi2g04116 | . | 114 | 586 | AGC Kinase gene family | AT5G47750 | 76.0 | 0.0 | 733.0 | |
| Lomi3g00179 | . | 9 | 525 | AGC Kinase gene family | AT2G26700 | 58.555 | 0.0 | 568.0 | |
| Lomi3g00438 | . | 4 | 518 | AGC Kinase gene family | AT4G33080 | 77.027 | 0.0 | 818.0 | |
| Lomi3g00815 | . | 2 | 469 | AGC Kinase gene family | AT3G14370 | 60.663 | 0.0 | 540.0 | |
| Lomi3g01396 | . | 1 | 1294 | AGC Kinase gene family | AT3G17850 | 64.351 | 0.0 | 1538.0 | |
| Lomi3g01441 | . | 86 | 765 | AGC Kinase gene family | AT2G44830 | 67.536 | 0.0 | 875.0 | |
| Lomi3g02979 | . | 5 | 373 | AGC Kinase gene family | AT3G25250 | 54.497 | 7.16e-142 | 408.0 | |
| Lomi3g03037 | . | 1 | 519 | AGC Kinase gene family | AT2G20470 | 76.245 | 0.0 | 828.0 | |
| Lomi4g00425 | . | 1 | 564 | AGC Kinase gene family | AT2G20470 | 72.31 | 0.0 | 838.0 | |
| Lomi4g00520 | . | 5 | 378 | AGC Kinase gene family | AT3G25250 | 54.688 | 1.21e-143 | 413.0 | |
| Lomi4g01889 | . | 119 | 499 | AGC Kinase gene family | AT5G58140 | 30.469 | 2.56e-52 | 186.0 | |
| Lomi4g01987 | . | 62 | 765 | AGC Kinase gene family | AT2G44830 | 65.877 | 0.0 | 889.0 | |
| Lomi4g02561 | . | 2 | 469 | AGC Kinase gene family | AT3G14370 | 60.455 | 0.0 | 541.0 | |
| Lomi4g02879 | . | 4 | 518 | AGC Kinase gene family | AT4G33080 | 77.413 | 0.0 | 826.0 | |
| Lomi4g03041 | . | 9 | 525 | AGC Kinase gene family | AT2G26700 | 58.935 | 0.0 | 576.0 | |
| Lomi5g00865 | . | 4 | 486 | AGC Kinase gene family | AT3G10540 | 76.483 | 0.0 | 780.0 | |
| Lomi5g01180 | . | 1 | 466 | AGC Kinase gene family | AT3G08720 | 67.019 | 0.0 | 628.0 | |
| Lomi5g01237 | . | 30 | 1164 | AGC Kinase gene family | AT5G62310 | 58.696 | 0.0 | 1282.0 | |
| Lomi5g01370 | . | 1 | 538 | AGC Kinase gene family | AT4G14350 | 81.784 | 0.0 | 904.0 | |
| Lomi5g02688 | LST | 135 | 233 | AGC Kinase gene family | AT5G58140 | 44.444 | 1.99e-20 | 94.0 | |
| Lomi5g02943 | LST | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.013 | 6.17e-09 | 58.5 | |
| Lomi6g00131 | ACH,LST | 121 | 350 | AGC Kinase gene family | AT3G08730 | 27.273 | 1.36e-10 | 60.5 | |
| Lomi6g00393 | . | 92 | 586 | AGC Kinase gene family | AT5G47750 | 78.812 | 0.0 | 794.0 | |
| Lomi6g00564 | . | 135 | 429 | AGC Kinase gene family | AT3G08720 | 37.037 | 9.75e-49 | 179.0 | |
| Lomi6g01275 | . | 62 | 910 | AGC Kinase gene family | AT5G58140 | 73.41 | 0.0 | 1272.0 | |
| Lomi6g01878 | LST | 134 | 234 | AGC Kinase gene family | AT5G58140 | 44.545 | 1.90e-21 | 97.4 | |
| Lomi7g00208 | . | 92 | 586 | AGC Kinase gene family | AT5G47750 | 78.685 | 0.0 | 791.0 | |
| Lomi7g00610 | . | 135 | 429 | AGC Kinase gene family | AT3G08720 | 37.037 | 1.38e-48 | 179.0 | |
| Lomi7g00713 | . | 88 | 343 | AGC Kinase gene family | AT3G08720 | 21.284 | 4.14e-08 | 54.3 | |
| Lomi7g00721 | . | 79 | 578 | AGC Kinase gene family | AT3G27580 | 66.794 | 0.0 | 676.0 | |
| Lomi7g01117 | . | 39 | 910 | AGC Kinase gene family | AT5G58140 | 71.188 | 0.0 | 1265.0 | |
| Lomi7g01663 | LST | 134 | 234 | AGC Kinase gene family | AT5G58140 | 44.545 | 2.79e-21 | 97.1 | |
| Lomi8g00138 | . | 81 | 1164 | AGC Kinase gene family | AT5G62310 | 57.895 | 0.0 | 1209.0 | |
| Lomi8g00559 | . | 71 | 451 | AGC Kinase gene family | AT3G44610 | 56.959 | 5.98e-157 | 450.0 | |
| Lomi8g00838 | . | 465 | 934 | AGC Kinase gene family | AT3G52890 | 61.017 | 0.0 | 570.0 | |
| Lomi8g00839 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 64.363 | 0.0 | 549.0 | |
| Lomi8g00919 | . | 22 | 499 | AGC Kinase gene family | AT5G40030 | 70.775 | 0.0 | 706.0 | |
| Lomi9g00607 | . | 11 | 504 | AGC Kinase gene family | AT5G09890 | 76.364 | 0.0 | 812.0 | |
| Lomi9g01606 | . | 113 | 555 | AGC Kinase gene family | AT1G79250 | 71.648 | 0.0 | 648.0 | |
| Lomi9g02122 | . | 1 | 1294 | AGC Kinase gene family | AT3G17850 | 62.585 | 0.0 | 1538.0 | |
| Lomi10g00431 | . | 71 | 451 | AGC Kinase gene family | AT3G44610 | 58.639 | 4.46e-157 | 450.0 | |
| Lomi10g00757 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 65.293 | 0.0 | 560.0 | |
| Lomi10g00838 | . | 54 | 586 | AGC Kinase gene family | AT5G47750 | 62.364 | 0.0 | 651.0 | |
| Lomi10g00884 | . | 22 | 499 | AGC Kinase gene family | AT5G40030 | 69.841 | 0.0 | 699.0 | |
| Lomi10g02539 | . | 88 | 586 | AGC Kinase gene family | AT5G47750 | 79.882 | 0.0 | 803.0 | |
| Lomi11g00752 | . | 4 | 486 | AGC Kinase gene family | AT3G10540 | 76.278 | 0.0 | 776.0 | |
| Lomi11g00950 | . | 1 | 466 | AGC Kinase gene family | AT3G08720 | 67.442 | 0.0 | 635.0 | |
| Lomi11g00984 | . | 30 | 1164 | AGC Kinase gene family | AT5G62310 | 58.592 | 0.0 | 1277.0 | |
| Lomi11g01183 | . | 1 | 538 | AGC Kinase gene family | AT4G14350 | 81.599 | 0.0 | 902.0 | |
| Lomi11g02459 | LST | 135 | 233 | AGC Kinase gene family | AT5G58140 | 45.37 | 3.66e-21 | 96.3 | |
| Lomi11g02699 | LST | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.431 | 2.15e-10 | 63.2 | |
| Lomi12g00217 | . | 1 | 1288 | AGC Kinase gene family | AT3G17850 | 63.74 | 0.0 | 1531.0 | |
| Lomi12g01567 | . | 11 | 504 | AGC Kinase gene family | AT5G09890 | 75.96 | 0.0 | 810.0 | |
| Lomi12g01835 | . | 25 | 459 | AGC Kinase gene family | AT3G08720 | 56.541 | 2.37e-179 | 508.0 | |
| Lomi13g00240 | . | 915 | 996 | AGC Kinase gene family | AT3G45780 | 60.976 | 3.66e-29 | 107.0 | |
| Lomi13g00744 | . | 1 | 466 | AGC Kinase gene family | AT3G08720 | 67.728 | 0.0 | 652.0 | |
| Lomi13g01961 | . | 383 | 934 | AGC Kinase gene family | AT3G52890 | 62.094 | 0.0 | 664.0 | |
| Lomi14g01001 | . | 1 | 996 | AGC Kinase gene family | AT3G45780 | 68.295 | 0.0 | 1376.0 | |
| Lomi15g00111 | . | 383 | 934 | AGC Kinase gene family | AT3G52890 | 61.372 | 0.0 | 660.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Lomi | Pkinase | 9.7e-37 | CL0016 | PK | AGC_RSK-2 |