Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi2g04117	ATGCCAAAGGTTCCGCTTTGGGATTTGCCAGAACTCCCCAAGAATCAGCTTCCACCTCATCTTCAACTTCAGAAAACTCGTGTTTTCTGCAATAATGATGCTCCAACTCATACAGAGAATATTACCTACTCTGGTGCATATGCATCAATGGGAGTTGACAACAGCTTAAGGCTTGACGAATTTAAAAAGAACTTTAAAGTTCAGGTGATTAAGCTAAATGAAGAAGACATGGAGTTTGATTTAATTGGAATTGATGCTTCTATTGCTAATGCTTTTAGAAGAATCCTCATTTCTGAGCTGCCTACAATGGCAATTGAGAAGGTTCTTGTTGCAAATAGTTCATCGGTGGTACAAGATGAGGTACTTGCCCACCGATTAGGGCTCATACCGATAAAGGTTGACCCGAGGCTGTTTGATTATATGTCAGAAAATGACGTTCCTAACGAGAAGAATTCTATTGTTTTTAAACTACATTTTAAGAACGAACGAGGATCTGGTGAACGTCGGACAGTGTACTCTCATGATCTGAAGTGGCTACCATTTGGCAGTGAATACGTGCTGCCGACTGAAAGTTCCGCAGATCCAACTTCAAAGCCAAAAACATACACATCGTTTACTTCCAGCCAAGACACATTGCCGGAATTTTCCAATAACCCAATCACTGTCACACCTGGAATTATTATTTCAAAACTTGGGCCTGGGCAGGAAATAGAGCTAGAAGCGCATGCTGTTAAAGGTCTTGGTAAAACACATGCCAAGTGGTCTCCTGTTGCCACTGCTTGGTACAGAATGCTCCCTGAGGTTATATTACTGCAAGACATTGAGGATGAGGATGCACAGATACTTGTAAAAAAATGCCCTGTTAATGTGTTTGACATTGAAGATATGGGTAAAGGTAGGAAGAGGGCTGCTGTGGCTCAACCAAGAGCTTGTACCCTGTGTAGGGAATGCATTAGAGAGCCTGGGTGGGAGGAAAAGGTTGCACTACGACGTGTGAAAGATCAATTTATCTTCACAATAGAATCAACGGGAGCATTGCCTCCTGAGGTACTATTCACTGAAGCTGTCAAGATCTTGGAAGACAAGTGCGAACGTGTGATATCTGAGCTCTCATAG	1116	42.38	MPKVPLWDLPELPKNQLPPHLQLQKTRVFCNNDAPTHTENITYSGAYASMGVDNSLRLDEFKKNFKVQVIKLNEEDMEFDLIGIDASIANAFRRILISELPTMAIEKVLVANSSSVVQDEVLAHRLGLIPIKVDPRLFDYMSENDVPNEKNSIVFKLHFKNERGSGERRTVYSHDLKWLPFGSEYVLPTESSADPTSKPKTYTSFTSSQDTLPEFSNNPITVTPGIIISKLGPGQEIELEAHAVKGLGKTHAKWSPVATAWYRMLPEVILLQDIEDEDAQILVKKCPVNVFDIEDMGKGRKRAAVAQPRACTLCRECIREPGWEEKVALRRVKDQFIFTIESTGALPPEVLFTEAVKILEDKCERVISELS	371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi2g04117	371	MobiDBLite	consensus disorder prediction	190	210	-	-
	Lomi2g04117	371	Gene3D	-	67	362	IPR036603	GO:0006351(InterPro)\|GO:0046983(InterPro)
	Lomi2g04117	371	Pfam	RNA polymerase Rpb3-RpoA insert domain	122	253	IPR011262	GO:0003899(InterPro)\|GO:0006351(InterPro)\|GO:0046983(InterPro)
	Lomi2g04117	371	SUPERFAMILY	Insert subdomain of RNA polymerase alpha subunit	101	256	IPR036643	-
	Lomi2g04117	371	SMART	rpoldneu2	76	369	IPR011263	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Lomi2g04117	371	SUPERFAMILY	RBP11-like subunits of RNA polymerase	63	370	IPR036603	GO:0006351(InterPro)\|GO:0046983(InterPro)
	Lomi2g04117	371	Hamap	DNA-directed RNA polymerase subunit Rpo3 [rpo3].	66	370	IPR022842	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Lomi2g04117	371	Pfam	RNA polymerase Rpb3-Rpb11 dimerisation domain	78	363	IPR011263	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Lomi2g04117	371	CDD	RNAP-I-II-AC40	65	369	IPR033901	GO:0001054(InterPro)\|GO:0001056(InterPro)
	Lomi2g04117	371	Gene3D	-	102	252	IPR036643	-
	Lomi2g04117	371	PANTHER	DNA-DIRECTED RNA POLYMERASE	23	371	IPR050518	GO:0001054(PANTHER)\|GO:0001056(PANTHER)\|GO:0003899(PANTHER)\|GO:0005666(PANTHER)\|GO:0005736(PANTHER)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi2g04117	K03027	DNA-directed RNA polymerases I and III subunit RPAC1

Event-related genes

Select	Gene_1	Gene_2	Event_name
	324185	Lomi2g04117	Lomi1g00512
	333292	Lomi1g00512	Lomi2g04117

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr2:46836078	Lomi5g02280	Lomi-Chr5:33070916	dispersed
	Lomi	Lomi-Chr1:4840514	Lomi2g04117	Lomi-Chr2:46836078	wgd