AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04124 ATGAGCACCGATCTCAAGTCCAAATTCCTGGAAGTTTATCACACTCTCAAATCCGAACTCATTCATGATCCATCATTCGAGTTCGACGATAATTCTCGTCAGTGGGTCGACCGTATGCTTGACTACAATGTACCTGGAGGGAAGTTGAACCGAGGCCTTTCTGTTGTGGACAGTTACAAGTTGCTTAAAGGAGAAGAACTAACAGATGATGAAGTCTTTCTTGCATGTGCTCTTGGTTGGTGCATTGAATGGCTTCAAGCATATTTTCTTGTACTTGATGATATAATGGATGAGTCTCATACACGCAGAGGCCAACCCTGTTGGTACAAAATACCCAAGGTTGGTATGATCGCTGTAAACGATGGAGTTGTTCTTCGCAACCATATTCCTAGAATTCTAAAGAAACATTTCAGAGCAAAGGCTTATTATGTGGATCTAGTGGACCTTTTTAATGAGGTAGAATTCCAAACAGCTTCTGGACAGATGATTGATTTGATCACAACACTTGTTGGTGAGAAAGATCTCTCGAAATATTCTTTGTCTACTCACCGCCGGATTGTGCAGTACAAAACTGCTTATTACTCGTTTTATCTTCCAGTTGCCTGCGCACTCCTTATGTTTGGAGAGAATCTAGATGATCATGTTCAAGTGAAAGATGTACTTGTTGAAATGGGCACCTATTTTCAAGTGCAGGATGATTATCTGGATTGTTTTGGTGCTCCTGAGGTGATTGGAAAGATTGGAACAGATATTGAAGACTTCAAATGTTCCTGGTTGGTTGTGAAAGCATTAGAACTTGCCAATGAGGAACAAAAGAAATCTCTACACGAGAACTATGGGAGAAAGGATCCAGCCTCTGTAGCAAAAGTGAAGGAACTTTACCACACTCTCAACCTTCAGGCTGTGTTTGAAGATTACGAGAACACGAGCCATGCGAAATTGATCAAATCAATTGAAGCTCACCCGAGCAAAGCAGTACAAGCAGTGTTAAAATCTTTCTTGGGAAAGATATATAAGAGGCAAAAGTAG 1029 40.91 MSTDLKSKFLEVYHTLKSELIHDPSFEFDDNSRQWVDRMLDYNVPGGKLNRGLSVVDSYKLLKGEELTDDEVFLACALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWYKIPKVGMIAVNDGVVLRNHIPRILKKHFRAKAYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSTHRRIVQYKTAYYSFYLPVACALLMFGENLDDHVQVKDVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFKCSWLVVKALELANEEQKKSLHENYGRKDPASVAKVKELYHTLNLQAVFEDYENTSHAKLIKSIEAHPSKAVQAVLKSFLGKIYKRQK 342
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04124 342 Pfam Polyprenyl synthetase 34 296 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Lomi2g04124 342 SFLD Isoprenoid Synthase Type I 6 340 - -
Lomi2g04124 342 ProSitePatterns Polyprenyl synthases signature 1. 90 104 IPR033749 -
Lomi2g04124 342 FunFam Farnesyl pyrophosphate synthase 1 341 - -
Lomi2g04124 342 SFLD Polyprenyl Transferase Like 6 340 - -
Lomi2g04124 342 SUPERFAMILY Terpenoid synthases 25 341 IPR008949 -
Lomi2g04124 342 Gene3D Farnesyl Diphosphate Synthase 1 341 IPR008949 -
Lomi2g04124 342 PANTHER FARNESYL-PYROPHOSPHATE SYNTHETASE 4 342 IPR039702 GO:0004161(PANTHER)|GO:0004337(PANTHER)|GO:0005737(PANTHER)|GO:0008299(InterPro)|GO:0016765(InterPro)|GO:0045337(PANTHER)
Lomi2g04124 342 CDD Trans-IPPS-HT 32 340 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Lomi2g04124 342 ProSitePatterns Polyprenyl synthases signature 2. 224 236 IPR033749 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04124 K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
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Event-related genes

Select Gene_1 Gene_2 Event_name
122815 Lomi2g04124 Lomi6g00396
122816 Lomi2g04124 Lomi7g00205
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:4429291 Lomi2g04124 Lomi-Chr2:46885627 transposed
Lomi Lomi-Chr5:27470413 Lomi2g04124 Lomi-Chr2:46885627 transposed
Lomi Lomi-Chr2:46885627 Lomi6g00396 Lomi-Chr6:4338472 wgd
Lomi Lomi-Chr2:46885627 Lomi7g00205 Lomi-Chr7:2055936 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00477 ACH 17 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 56.25 2.12e-149 426.0
Lomi2g04124 ACH 42 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 76.968 0.0 556.0
Lomi5g01615 . 39 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 60.116 3.93e-158 448.0
Lomi6g00396 ACH,LST 42 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 77.843 0.0 563.0
Lomi7g00205 ACH,LST 42 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 76.968 0.0 556.0