AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04125 ATGGCGGATACAGAAACGTTTGCTTTTCAAGCAGAAATCAACCAGCTTTTGAGTCTAATCATCAACACTTTCTACAGTAACAAGGAGATCTTTCTTCGTGAGCTTGTTAGCAATGCATCCGATGCTCTGGATAAGATTCGTTTTGAGAGCTTGACTGATAAGAGCAAGCTAGATGGTCAGCCAGAGCTATTCATCCACATTATTCCTGATAAGGCAAGCAACACATTAACCATCATCGACAGTGGAATTGGGATGACAAAAGCTGATTTGGTGAACAATTTGGGAACCATTGCTCGATCTGGTACCAAAGAATTCATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGTATGATTGGACAATTTGGTGTTGGATTCTACTCAGCATACCTGGTTGCAGAGAAGGTCATTGTTACCACGAAACACAATGACGATGAGCAGTATGTTTGGGAGTCCCAAGCTGGTGGTTCTTTCACAATAACCCGTGATGAAAGTGAGCCACTTGGCAGGGGCACGAAAATTACCCTTTACCTCAAAGAGGACCAGCTCGAGTATCTTGAGGAGCGCAGACTCAAGGATCTGATCAAGAAGCATTCTGAATTCATTAGCTACCCGATCTCACTCTGGACTGAAAAGACAACCGAGAAGGAAATATCTGATGATGAAGACGAGGAAGAGAAGAAAGATGAAGAAGGCAAAGTTGAGGAGGTTGATGAAGAAAAAGAAAAGGAAGAAAAGAAAAAGAAGACGATTAAGGAAGTTTCACACGAGTGGTCGTTAATGAACAAGCAAAAGCCCATCTGGATGAGGAAACCAGAGGAGATCACTAAGGAAGAATACGCAGCTTTCTACAAGAGTTTAACCAATGATTGGGAGGAGCACTTGAATGTAAAGCACTTTTCGGTTGAAGGGCAGTTGGAATTTAAAGCTGTTCTCTTTGTACCTAAAAGAGCCCCCTTTGACCTGTTTGACTCGAAGAAGAAGCCCAACAACATCAAGCTTTATGTTCGTCGTGTCTTTATCATGGACAACTGCGAGGATATCATACCTGAATATCTTGGATTTGTTAAGGGTATTGTGGATTCTGAAGATCTTCCGTTAAACATATCAAGAGAAATGTTGCAACAGAACAAGATCCTCAAGGTAATCCGCAAGAATTTGGTGAAAAAATGCATTGAACTTTTTCAAGAAATTGCAGAAAACAAAGAAGATTACGCTAAATTCTACGAAGCCTTCTCAAAGAATCTGAAACTTGGTATCAATGAAGATTCGACTAACCGGACCAAACTTGCTGAATTACTTAGATACCACTCCACCAAAAGTGGTGATGAACAAACTAGCTTGAAGGACTATGTTACAAGAATGAAAGAAGGTCAAAACGACATCTATTACATTACTGGTGAGAGCAAAAAAGCTGTAGAGAATTCTCCGTTTCTTGAGAAGTTAAAAAAGAAGGGATATGAGGTCTTGTACATGGTTGATGCCATTGATGAGTACGCTGTGGGCCAGTTGAAGGAATTTGAAGGAAAGAAGCTTGTGTCCGCTACTAAAGAAGGTCTAAAGCTTGAGGAAACCGAAGACGAGAAGGCAAAACAAGAATCTTTAAAGGAGAAATTTGAGGGTTTGTGTAAGGTGATTAAGGATGTGCTGGGTGATAAGGTTGAGAAAGTGGTTGTGTCTGACCGTGTTGTGGACTCACCATGCTGTCTGGTTACCGGGGAGTACGGGTGGACTGCCAACATGGAAAGAATCATGAAGGCACAGGCGTTGAGGGATGCCAGCATGGCCGGATACATGTCTAGTAAGAAGACGATGGAGATTAACCCTGAGAATTCTATTATGGAGGAGTTGAGGAAAAGGGCTGATGCAGACAAGAACGATAAGTCTGTTAAGGATTTGGTTCTGTTGCTGTTCGAGACTGCTTTGTTGACTTCTGGATTTAGTCTTGATGAACCAAACACGTTTGGCAACAGAATTCATAGGATGTTGAAGCTTGGATTGAGCATTGATGATGATGATGCAGGTGAGGGTGATGCTGATATTCCTGCTCTTGAAGAAGCTGATATTGATGCGGAGGGCAGCAAAATGGAGGAAGTGGACTAA 2100 42.05 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELVSNASDALDKIRFESLTDKSKLDGQPELFIHIIPDKASNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTITRDESEPLGRGTKITLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDEEGKVEEVDEEKEKEEKKKKTIKEVSHEWSLMNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLNVKHFSVEGQLEFKAVLFVPKRAPFDLFDSKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCIELFQEIAENKEDYAKFYEAFSKNLKLGINEDSTNRTKLAELLRYHSTKSGDEQTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLEETEDEKAKQESLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDASMAGYMSSKKTMEINPENSIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDDDDAGEGDADIPALEEADIDAEGSKMEEVD 699
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04125 699 Gene3D - 1 226 IPR036890 -
Lomi2g04125 699 Coils Coil 521 541 - -
Lomi2g04125 699 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 180 IPR003594 -
Lomi2g04125 699 SUPERFAMILY HSP90 C-terminal domain 541 662 IPR037196 -
Lomi2g04125 699 SMART HKATPase-4 27 181 IPR003594 -
Lomi2g04125 699 FunFam Heat shock protein 90 alpha 517 667 - -
Lomi2g04125 699 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 5 212 IPR036890 -
Lomi2g04125 699 SUPERFAMILY Ribosomal protein S5 domain 2-like 262 517 IPR020568 -
Lomi2g04125 699 MobiDBLite consensus disorder prediction 212 247 - -
Lomi2g04125 699 FunFam Heat shock protein 90 alpha 261 429 - -
Lomi2g04125 699 FunFam Heat shock protein 90 alpha 430 516 - -
Lomi2g04125 699 Pfam Hsp90 protein 183 685 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Lomi2g04125 699 MobiDBLite consensus disorder prediction 674 699 - -
Lomi2g04125 699 Coils Coil 219 256 - -
Lomi2g04125 699 Hamap Chaperone protein HtpG [htpG]. 2 663 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Lomi2g04125 699 FunFam Heat shock cognate protein 2 227 - -
Lomi2g04125 699 Gene3D - 430 516 - -
Lomi2g04125 699 MobiDBLite consensus disorder prediction 216 237 - -
Lomi2g04125 699 Gene3D - 517 666 IPR037196 -
Lomi2g04125 699 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 3 672 IPR001404 GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(PANTHER)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(PANTHER)|GO:0051082(InterPro)|GO:0140662(InterPro)
Lomi2g04125 699 CDD HATPase-Hsp90-like 14 201 IPR020575 -
Lomi2g04125 699 Gene3D - 261 429 - -
Lomi2g04125 699 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Lomi2g04125 699 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Lomi2g04125 699 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Lomi2g04125 699 PRINTS 90kDa heat shock protein signature 169 186 IPR020575 -
Lomi2g04125 699 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Lomi2g04125 699 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Lomi2g04125 699 PRINTS 90kDa heat shock protein signature 187 205 IPR020575 -
Lomi2g04125 699 PIRSF HSP90-HTPG 1 699 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Lomi2g04125 699 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04125 K04079 molecular chaperone HtpG
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Event-related genes

Select Gene_1 Gene_2 Event_name
118652 Lomi11g01824 Lomi2g04125
122817 Lomi2g04125 Lomi5g01903
122818 Lomi2g04125 Lomi7g00203
324180 Lomi2g04125 Lomi1g00504
333297 Lomi1g00504 Lomi2g04125
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:46898445 Lomi5g01905 Lomi-Chr5:30383037 dispersed
Lomi Lomi-Chr1:4767082 Lomi2g04125 Lomi-Chr2:46898445 wgd
Lomi Lomi-Chr11:26632490 Lomi2g04125 Lomi-Chr2:46898445 wgd
Lomi Lomi-Chr2:46898445 Lomi5g01903 Lomi-Chr5:30366980 wgd
Lomi Lomi-Chr2:46898445 Lomi7g00203 Lomi-Chr7:2044863 wgd