AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04127 ATGGCGATTTTCGCGGTAAAATTGAATTATGGATCTGCATTGAAGCTTCAGTCTCGAGTGTTCATGAATCTGTGGGCAACGAAGGTTATAATAGTTCGTTGTTGTTCCAATTTGGGGGAAAGGTCTACGAATTTTCCAGTTAGGTACACTCCTAAGAAATCTTCAAAATATAATAAACCTAACGATTTTGCTCCAAAGGAATCCGAGAATTATGAAATGCGTCGTAGTCGATTCAGAAACCCTAATTTGACGAATGTTACTTTAGACACATCAAAGGATATTGATTTTAATACAGGGAATTTAAGATCAGAAGAGAACAAATTTTGTAATTCAGATACGAGATTAAAGCCTATGAAAGAACTTCATGAGTTTGATGACATGGATGCTTATGAGGAGGGTATAGATGATGAACTTGACTTTGATAATGGAAATTACGAAGTTAAAAGTCTGGAATTTGAGCGTAGTAAAACTAAAGAAGAAGCTGAGAAGACAGCGATTGGATTGCTTGCTGCAAGAGCATATACAGCACTCGAGCTGAAGAAGAAACTGCTAGGAAAGAAGTTCCCTCTTCAAGTTGCCAATGCTGTGATTTCTGACTTCCAGAACAGAGGGTTGATTAATGATTTCTTGTATGCTGAAGCATTTTCTCGGTCAAGATGGTCTTCATCAAGTTGGGGTCCACGTAGAATCAAGCAAGCCCTGACTAAAAAAGGTGTCAATGATTTCGATGCACAGAAAGCTATAAAGTTGGTTTTAGAGGATGGTGAACCCGGTGATGATCAGGTTTCACGACTTGGATTGTCAAAGCCCTCGATGGACCATCTATTTGCCCAAGCTTCAAAGCAATGGCTCCGTGCTAAAGATCTTCCCAGTGAAAAGCAAAAGTCAAGGATCATCACGTGGCTTCAATACCGTGGCTTTAACTGGGGCATTATCAGCTTCATCTTGAAAAAGTTACAAGCGGAGCATCCTCCATAG 978 39.78 MAIFAVKLNYGSALKLQSRVFMNLWATKVIIVRCCSNLGERSTNFPVRYTPKKSSKYNKPNDFAPKESENYEMRRSRFRNPNLTNVTLDTSKDIDFNTGNLRSEENKFCNSDTRLKPMKELHEFDDMDAYEEGIDDELDFDNGNYEVKSLEFERSKTKEEAEKTAIGLLAARAYTALELKKKLLGKKFPLQVANAVISDFQNRGLINDFLYAEAFSRSRWSSSSWGPRRIKQALTKKGVNDFDAQKAIKLVLEDGEPGDDQVSRLGLSKPSMDHLFAQASKQWLRAKDLPSEKQKSRIITWLQYRGFNWGIISFILKKLQAEHPP 325
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04127 325 Pfam RecX, third three-helix domain 273 315 IPR053925 -
Lomi2g04127 325 PANTHER REGULATORY PROTEIN RECX FAMILY PROTEIN 14 324 IPR003783 GO:0006282(InterPro)
Lomi2g04127 325 Hamap Regulatory protein RecX [recX]. 133 323 IPR003783 GO:0006282(InterPro)
Lomi2g04127 325 Pfam RecX, second three-helix domain 207 247 IPR053924 -
Lomi2g04127 325 Gene3D - 270 324 IPR036388 -
Lomi2g04127 325 Gene3D - 207 250 IPR036388 -
Lomi2g04127 325 Gene3D - 160 205 IPR036388 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04127 K03565 regulatory protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
324179 Lomi2g04127 Lomi1g00501
333298 Lomi1g00501 Lomi2g04127
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:4740689 Lomi2g04127 Lomi-Chr2:46921523 wgd