AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04134 ATGAGCTGGTGGCGATCAGGATTCGTCGGTGCTGCAAGGAAAAAACTCGAAGACAGCAACCCATCACGCAAGTACCAAAGGTTCGCTTTAGTCATTGGCGTCACAGGCATTGTTGGAAATAGCCTTGCAGAAATCCTACCGCTTCATGACACCCCTGGTGGGCCCTGGAAGGTGTATGGAGTGGTCCGCCACCCTCGACCACCATGGCACGCAGATTATCCATTGGAATATATCCAGTGTGACATCACAAATCCAGAAGAAACACAATCAAAACTCTCAAATTTACCAGATCTCACCCATGTATTTTACGTAACATGCGCTAACTGCTCAACTGAAGAAGAAAATTGTGAAGTCAATGGGCAAATGTTCAGAAATGTTCTAAATGCAGTAATACCTAATGCCCCGAATTTACAACACATATGCTTACAAACGGGTCGTAAGCATTATCTCGGACCATTTGAACAATGGGGGAAGGTTGATACAACTCATGATGGTCCTTTTTATGAAGATCTTCCTAGGCTTAATACCCAAAATTTCTACTACACACTAGAAGATATGTTGTTTAAAGAGGTAAAACAAAAGGAAGGATTAACATGGTCGGTTCATAGACCGGGTTTGATTTTTGGGTTATCACCGTATAGTATGATGAACATATTAGGAAGTTTATGTGTTTATGCTGAAATCTGTAAATATGAAGGTGAACCATTGAAGTTTCCAGGAACAAAAGAGGCGTGGAATAGCTATCATGACGCTTCTGATGCTGACCTGATTGCTGAGCATCATATATGGGCGGCTGTGGACCAGTACGCAAAAAATGAAGCGTTTAATGTCAGTAATGGTGATGTATTCAAATGGAAGCATTTTTGGAAAGTGTTGGCTGAGCAATTTGATGTGGAAAACGGCGGGCTACAAGAAGATGAAGATAGGAAGAGTTTGAATGAGATGATGAAAGATAAAGGACCAGTTTGGGATGCAATCGTGACAGAAAAGGGCCTTTTACCGACTAAATTAGAGCAGGTTGGAGGATGGTGGTTTGTGGATGTTATTCTTAGCAAGGAGGGTATGCTGGATATCATGAACAAGAGCAAGGAACATGGTTTTTTAGGGTTTCGGAACACAAAATCATCTTTAGTTTCTTGGATTGATAAGATAAAATGTTGCAAGCTTGTTCCCTAG 1176 41.5 MSWWRSGFVGAARKKLEDSNPSRKYQRFALVIGVTGIVGNSLAEILPLHDTPGGPWKVYGVVRHPRPPWHADYPLEYIQCDITNPEETQSKLSNLPDLTHVFYVTCANCSTEEENCEVNGQMFRNVLNAVIPNAPNLQHICLQTGRKHYLGPFEQWGKVDTTHDGPFYEDLPRLNTQNFYYTLEDMLFKEVKQKEGLTWSVHRPGLIFGLSPYSMMNILGSLCVYAEICKYEGEPLKFPGTKEAWNSYHDASDADLIAEHHIWAAVDQYAKNEAFNVSNGDVFKWKHFWKVLAEQFDVENGGLQEDEDRKSLNEMMKDKGPVWDAIVTEKGLLPTKLEQVGGWWFVDVILSKEGMLDIMNKSKEHGFLGFRNTKSSLVSWIDKIKCCKLVP 391
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04134 391 Gene3D - 27 391 - -
Lomi2g04134 391 CDD 5beta-POR-like-SDR-a 29 331 - -
Lomi2g04134 391 FunFam Iridoid synthase 25 391 - -
Lomi2g04134 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 301 IPR036291 -
Lomi2g04134 391 Pfam PRISE-like Rossmann-fold domain 87 391 - -
Lomi2g04134 391 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE 23 391 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04134 K22419 Delta4-3-oxosteroid 5beta-reductase [EC:1.3.1.3]
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Event-related genes

Select Gene_1 Gene_2 Event_name
122825 Lomi2g04134 Lomi3g00932
122826 Lomi2g04134 Lomi4g02446
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:46987396 Lomi3g00932 Lomi-Chr3:7611625 dispersed
Lomi Lomi-Chr2:46987396 Lomi4g02446 Lomi-Chr4:32282608 transposed