Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04150 | ATGTCTTCCTTTGCCACAGCTGAAGTTTGTGATGCAAATGCACCCCACTTAGCAAGTGGTGATCTCCGAGCCCTGGCTCCCGTGTTCAAGATTTATGGACAATGTCGAGCTTTCTCGGGGCCCATAGTCACACTCAAGGTGTTTGAGGACAACGTGTTAGTTAGAGACCATCTCGAGAGCAAAGGTGAAGGTAGGGTCCTAGTCATTGATGGTGGAGGAAGCATGAGATGTGCACTTGTTGGTGGCAATTTGGGCCAGTTGGCTCAGAACAATGGGTGGGCTGGGATTGTGGTCAATGGTTGCATCCGCGACGTTGATGAGATCAACGGGTGTGATATTGGGGTTAGAGCATTGGCTTCTCATCCTCAAAAGTCAAATAAAAGAGGCGTTGGTGAAAAGAATGTGCCAGTTCACATTGGAGGAACCTTGATCCATGATGGTGAATGGTTGTATGCGGATAGTGATGGTATTCTTGTGTCGAAAACTGAGATATCTTTATAA | 501 | 47.11 | MSSFATAEVCDANAPHLASGDLRALAPVFKIYGQCRAFSGPIVTLKVFEDNVLVRDHLESKGEGRVLVIDGGGSMRCALVGGNLGQLAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPQKSNKRGVGEKNVPVHIGGTLIHDGEWLYADSDGILVSKTEISL | 166 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04150 | 166 | PANTHER | 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED | 1 | 165 | - | - | |
| Lomi2g04150 | 166 | SUPERFAMILY | RraA-like | 4 | 163 | IPR036704 | - | |
| Lomi2g04150 | 166 | CDD | RraA-family | 7 | 160 | IPR005493 | - | |
| Lomi2g04150 | 166 | Pfam | Aldolase-RraA | 6 | 159 | IPR005493 | - | |
| Lomi2g04150 | 166 | Gene3D | - | 1 | 166 | - | - | |
| Lomi2g04150 | 166 | NCBIfam | RraA family | 6 | 160 | IPR010203 | GO:0008428(InterPro)|GO:0051252(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04150 | K02553 | regulator of ribonuclease activity A |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr11:29291244 | Lomi2g04150 | Lomi-Chr2:47125954 | dispersed | |
| Lomi | Lomi-Chr2:47125954 | Lomi5g02298 | Lomi-Chr5:33186143 | wgd |