AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04155 ATGGATATGGTGTTTTGTTCAAAACCCCATTGGTTTCATTCCCATTTACAAGGGTATCAACAGCAATCAGTTTTTTCTTCCTTTCATTATTGCAAAACCCTTAACTTTACACGCTCAACATCTTTGTATGCCGCCAAAAAGACAAGGGTTATTTCACATCTTGATTCTAGAGTTAATGGTGCTCTTTCATCAGACCCCGATTCCACTTTTCTTGACAGGCAAAAAGCACTGGAAGCTGCAATGAATGACATTAACAACTCATTCGGGAAAGGAAGTGTCACGAGACTCGGAAGTCTCGGTGGTGCTCTTGTCGAAACATTCCCAAGTGGTTGTCTCCCCTTAGACCTTGCGTTAGGTGGTGGCTTGCCTAAAGGGAGAATTGTAGAGATTTATGGACCTGAAAGTAGTGGAAAGACCACCTTGGCACTACATGCCATTGCAGAAGTTCAGAAGCTAGGGGGCAATGCAATGCTTGTTGATGCAGAGCATGCATTTGATCCATCATATTCTAAAGCCCTAGGAGTCGATGTGGAAAATTTGATTGTTTGCCAACCGGATAATGGAGAAATGGCACTTGAGATTGCAGACCGAATGTGTAGATCGGGTGCCGTTGATCTCATTTGCATCGACTCTGTCTCTGCTCTTACTCCACGAGCTGAGATTGAAGGGGAGATTGGGATGCAGCAAATGGGTTTGCAAGCACGTCTCATGAGTCAAGCATTGCGTAAGATGTCAGGCAATGCATCTAAAGCTGGATGTACTCTTATCTTTCTCAACCAAATAAGATACAAGATAGGAGTTTTTTATGGAAATCCGGAAGTTACAAGTGGGGGTATTGCTTTAAAGTTTTTTGCATCTGTTCGACTTGAAATACGCCCTATTGGGAAGATAAAGTCTGTGAAAGGTGATGAGGACATTGGGCTTAAGGTTCGAGTAAGAGTTCAAAAGAGTAAGGTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATATTCGGGGAGGGAGCCAGCAAATTGGGATGTATATTGGACTGTGCTGAAATGATGGACATTGTGTTGAAGAAGGGCTCTTGGTATAGCTATCGAGATCAAAGGTTGGGGCAAGGAAGAGATCGCGCATTGCAGTACTTGAGAGAAAACCTTCCCCTTTGTGATGAAATTGAAAAGATGGTCAGGTCGGCAATGATGGATGAAACTGGGCAAGCAGTTACTTCCTACGCTCGACACTCGACACCACTTAATGAAGAGGATGAATTACTTGAAGAAATTTAA 1272 42.85 MDMVFCSKPHWFHSHLQGYQQQSVFSSFHYCKTLNFTRSTSLYAAKKTRVISHLDSRVNGALSSDPDSTFLDRQKALEAAMNDINNSFGKGSVTRLGSLGGALVETFPSGCLPLDLALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSVKGDEDIGLKVRVRVQKSKVSRPYKQAEFEIIFGEGASKLGCILDCAEMMDIVLKKGSWYSYRDQRLGQGRDRALQYLRENLPLCDEIEKMVRSAMMDETGQAVTSYARHSTPLNEEDELLEEI 423
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04155 423 SMART AAA-5 124 295 IPR003593 GO:0016887(InterPro)
Lomi2g04155 423 PRINTS RecA protein signature 312 341 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Lomi2g04155 423 PRINTS RecA protein signature 194 223 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Lomi2g04155 423 PRINTS RecA protein signature 232 261 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Lomi2g04155 423 PRINTS RecA protein signature 277 305 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Lomi2g04155 423 PRINTS RecA protein signature 366 383 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Lomi2g04155 423 PRINTS RecA protein signature 160 189 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Lomi2g04155 423 ProSiteProfiles RecA family profile 2. 266 341 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Lomi2g04155 423 SUPERFAMILY RecA protein, C-terminal domain 337 394 IPR023400 -
Lomi2g04155 423 NCBIfam recombinase RecA 72 392 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Lomi2g04155 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 335 IPR027417 -
Lomi2g04155 423 Gene3D - 102 403 IPR027417 -
Lomi2g04155 423 ProSitePatterns recA signature. 280 288 IPR020584 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Lomi2g04155 423 Pfam RecA C-terminal domain 340 395 IPR049261 -
Lomi2g04155 423 FunFam DNA repair protein recA 1 like 102 397 - -
Lomi2g04155 423 PANTHER RECA 55 404 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Lomi2g04155 423 ProSiteProfiles RecA family profile 1. 103 261 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Lomi2g04155 423 Pfam recA bacterial DNA recombination protein 75 336 IPR049428 -
Lomi2g04155 423 Hamap Protein RecA [recA]. 73 398 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Lomi2g04155 423 CDD RecA 104 338 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04155 K03553 recombination protein RecA
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:36503628 Lomi2g04155 Lomi-Chr2:47164910 dispersed
Lomi Lomi-Chr2:47164910 Lomi4g01188 Lomi-Chr4:19382086 dispersed
Lomi Lomi-Chr1:4393561 Lomi2g04155 Lomi-Chr2:47164910 wgd