AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04166 ATGGAGCGATTCGGTGGTGGTGGTGGTGATCTTAATCCGCAACTTACTTCGAATTCATCAGGTGCTTTATTTGATGCATCACAGTATGCGTTTTTTGGTAATGAAGTTCTCGAAGAAGTCGAGTTGGGAGGCCTAGAGGATGAAGAGGAAGACATTCCGGTAGCTAAGTTTGAGGAAGAAGAGTTTCAGTTGGAGCCAGAAGAGGGTGTGTATCCAGGAATTGACGATCTTTCCACCACATTTTCAAAGCTCAACAAAGATGTCAGGGGGCCAAGTGTTGGAGTCTTTGTTGACCGAGGATCCAGAGAAAATTCATCTTCAGCAGAATGGGCACAGGGAGGAGAATACACCAACTGGCTTGATCAAGATATTTTTGACGCCGAAAATGGTCAGCAAAGCAATAGATGGTCAAACTCTGCCTTCCCTCTTCAAGATCCATCAATGCTTCTACACAGAACATCTTCGTACCCTGATCATCAACAGAATATTAACAGAACATCATCGTATCCTGAGCAACAGTATCAACAACAGAACCTTAACCAGCACCTAATAGATGACTCGAAGAATCTCCACAGGACATCATCTTACCCTGAGCAGCAGCAACAACAATTCAGTCGTCATATGCATTTCTCTAGTGAGCCGGTTCCTGTTCCAAAATCTTCTTTCATCTCATACCCTCCGCCAGGTGGCGGGTCCCCCCAAGCTTCACCCAACCAACATTTACGTCATCTTAATGCTCCATACGGACACCAGATGCAACCATCGTTCTCCAATATATCTCCACAAGTTCAGAGGGGTGGGATGCCTCACGGATCCCAGTTCGGTGGGAATTTGTCTCAGTTTCGTCCTCCTGCCCCCAATCTTCTACAAAACCAGTTTGGTGGTAATTTACCTGATCTTTCAAATGGTATGCTGCAACAACAGTTTGCCCAAAAGAATGGGTTGATGCCTCCACAGTTGCTGTCGCAACAGCAACCACAGCAAAACAGGTTCCACAATCAGTTTCAGCCATCTTTTGGCCATTTATCTGGTTTGCAGCCACCCCACTTAATGAATCACCATCTCTCTCCACCCCCTTCTCTGATGAACAATTTTGAACTCCTTGGGATGGGTTCAAGAGATTTGAGGCCAAAATCTGTGCCCAAAGGTAGACCGGGCCAAAGATATGGCTTTGATACCACTGGATGGCCACAGTTCAAATCAAAATACATGACAGCTGACGAGATTGAAAATATTCTCAGAATGCAACTTGCTGCTACACACAGTAACGATCCTTATGTAGATGACTACTATCACCAAGCTTGCCTAGCAAACAAATCTAGTGGTGCGAAATTAAGACATCATTTCTGCCCGACTCTGTTAAGGGATTGTCCTCCCAGAGCACGTGCTGCTAACGAGCCACATGCTTTTCTTCAAGTTGATGCTTTGGGTCGAGTTTCTTTTTCCTCAATACGTCGTCCTCGCCCACTTCTTGAGGTCGACCCACCAAAGTCAGCCAGCGGTGGAAATCCTGATCAGAAAATGTTGGACAAACCGTTGGAACAAGAACCCATGCTTGCAGCTAGAGTCACCATTGAAGATGGCATTTGTCTTCTTTTAGATGTTGATGATATTGACCGCTTTCTACAGTTTAATCAGCTCCAAGATGGTGGAGCCCAATTGAGGCAAAGGAGACAAGTCCTTTTAGAAGGTTTAGCAACATCACTTCAGCTTGTTGACCCGTTAGGTAAGGATGGTCAACCAGTAGAATTAGCTTCCAAGGATGATCTTGTCTTTTTACGGTTAGTTTCCCTTCCAAAGGGCCGGAAGCTTCTATCGAGGTACCTTCAACATCTTGCCCCAGGAAGTGAGCTAAATCGCATCGTTTGCATGGCTATCTTCCGTCATTTAAGGTTTTTATTTGGAGTTCTTCCTGTAGACTCCGGAGCAACAGAAACTATTAACAATCTTGTAAAGACCGTTTCGTTGTCTGTTAAAGGGATGGAGCTTCGAGCATTGGGTGCTTGTCTTGCATCTGTTGTTTGTTCTTCAGAGCATCCACCACTACGTCCTGTTGGAAGTGCAGCAGGCGATGGGGCATCTGTTGTGTTAAAATGTATATTAGAAAGGGGAGCCGAGCTCTTAACTGATCCACATGCTGTTAGTAGCTGCAGCATGCCAAATCGGGCATTTTGGCAGGCCTCTTTTGATGCTTTCTTTGGACTTCTTACCAAGTACTGTTTTAGTAAATATGATGCTGTTTTCGGGTCAGAGGGGGCAAGAGCTTTTAGTCGGGAAATGCCTGTTGAACTCTTGCGTGCCAGTATTCCTCATACAAATGAAAACCAGCGGAAGCTGCTACTGGAATTCGCTCAGCGTTCAATGCCTGTGCTTGGGAATGAATAG 2385 45.37 MERFGGGGGDLNPQLTSNSSGALFDASQYAFFGNEVLEEVELGGLEDEEEDIPVAKFEEEEFQLEPEEGVYPGIDDLSTTFSKLNKDVRGPSVGVFVDRGSRENSSSAEWAQGGEYTNWLDQDIFDAENGQQSNRWSNSAFPLQDPSMLLHRTSSYPDHQQNINRTSSYPEQQYQQQNLNQHLIDDSKNLHRTSSYPEQQQQQFSRHMHFSSEPVPVPKSSFISYPPPGGGSPQASPNQHLRHLNAPYGHQMQPSFSNISPQVQRGGMPHGSQFGGNLSQFRPPAPNLLQNQFGGNLPDLSNGMLQQQFAQKNGLMPPQLLSQQQPQQNRFHNQFQPSFGHLSGLQPPHLMNHHLSPPPSLMNNFELLGMGSRDLRPKSVPKGRPGQRYGFDTTGWPQFKSKYMTADEIENILRMQLAATHSNDPYVDDYYHQACLANKSSGAKLRHHFCPTLLRDCPPRARAANEPHAFLQVDALGRVSFSSIRRPRPLLEVDPPKSASGGNPDQKMLDKPLEQEPMLAARVTIEDGICLLLDVDDIDRFLQFNQLQDGGAQLRQRRQVLLEGLATSLQLVDPLGKDGQPVELASKDDLVFLRLVSLPKGRKLLSRYLQHLAPGSELNRIVCMAIFRHLRFLFGVLPVDSGATETINNLVKTVSLSVKGMELRALGACLASVVCSSEHPPLRPVGSAAGDGASVVLKCILERGAELLTDPHAVSSCSMPNRAFWQASFDAFFGLLTKYCFSKYDAVFGSEGARAFSREMPVELLRASIPHTNENQRKLLLEFAQRSMPVLGNE 794
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04166 794 MobiDBLite consensus disorder prediction 487 509 - -
Lomi2g04166 794 MobiDBLite consensus disorder prediction 193 209 - -
Lomi2g04166 794 MobiDBLite consensus disorder prediction 150 174 - -
Lomi2g04166 794 PANTHER TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 20 177 IPR039900 GO:0000290(PANTHER)|GO:0000290(InterPro)|GO:0000932(PANTHER)|GO:0003723(PANTHER)|GO:0033962(PANTHER)
Lomi2g04166 794 MobiDBLite consensus disorder prediction 192 239 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04166 K12617 DNA topoisomerase 2-associated protein PAT1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:47206117 Lomi7g01808 Lomi-Chr7:28675757 dispersed
Lomi Lomi-Chr1:4449350 Lomi2g04166 Lomi-Chr2:47206117 wgd