AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04170 | ATGAATGAAAGGAACAAAAATGTGTACGATAACGAAATAAAATTTGAGTACGGATTACATCACATGGAAAGTGGAATGCTCCCAATGTATGTTTCAACTGGGTTTATGGATACAATTCCGGCAGCCGATAGCGGACTTACGTATAGTGTTCCGATTTCTCGAAAACGATCACGCGATGCGACGTCGTTTGATCCGCCCATTTTATCGTTTCAAAATACTCAGTTTGTTAATCAGAATGAATTCAACAATCAAAAAGAAACGTTCACGTTTCTTGATCAGGATATCTCCATGCAAATCTATCAACAACAACTCGAAATGGATCACTTCATTTCTGATCACCTGCAGATGGAAAAAGTGAGATTAGAGATCGAAGCGACACGAAGGAGAAACTCATTGAGATTAATCGCGGCAGTCGAAGAAGGAATGAAGAAAAAATTAAGATCAAAAGATGATGAAATAAACAAACTCGGAAGATTAAATTTGGCATTAGAAGAAAAGGTAAAGTCTCTTAATTTAGAGAATCAATTATGGCAACAAATGGCGGAAACAAACGAAGCAACGGCAAATGTGTTCCGACAAAATTTACAACAAATTACAACACAAAATCAACAACAGTTTCAAAACGACGACGTTGAGTCGTGTTGTGGGAGTAATTACGAAAACGATAACAATCAACGAAATATGTTAACAAAAGGAAATGAAAATGAAGCGTACTGTACAACAATTAGGGACAACAATAATGGTAACAGGTGGTGCAGTAATTGTGGGAATAGGGAGTTAAGTGTATTACTATTACCTTGCAGACATCTGTGTATCTGTACTGTATGTGACTCCTCCATCAACTTCTGTCCCCTCTGTAAATCTGCAAAAAATGCCAGTCTACATGTTAATATGAGTTAA | 900 | 36.89 | MNERNKNVYDNEIKFEYGLHHMESGMLPMYVSTGFMDTIPAADSGLTYSVPISRKRSRDATSFDPPILSFQNTQFVNQNEFNNQKETFTFLDQDISMQIYQQQLEMDHFISDHLQMEKVRLEIEATRRRNSLRLIAAVEEGMKKKLRSKDDEINKLGRLNLALEEKVKSLNLENQLWQQMAETNEATANVFRQNLQQITTQNQQQFQNDDVESCCGSNYENDNNQRNMLTKGNENEAYCTTIRDNNNGNRWCSNCGNRELSVLLLPCRHLCICTVCDSSINFCPLCKSAKNASLHVNMS | 299 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04170 | 299 | PANTHER | SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN | 41 | 299 | - | GO:0004842(PANTHER)|GO:0043067(PANTHER) | |
| Lomi2g04170 | 299 | FunFam | Baculoviral IAP repeat containing 7 | 261 | 296 | - | - | |
| Lomi2g04170 | 299 | Gene3D | - | 101 | 130 | - | - | |
| Lomi2g04170 | 299 | CDD | mRING-HC-C3HC5-CGRF1-like | 252 | 287 | - | - | |
| Lomi2g04170 | 299 | Pfam | Zinc finger, C3HC4 type (RING finger) | 251 | 289 | - | - | |
| Lomi2g04170 | 299 | Coils | Coil | 153 | 180 | - | - | |
| Lomi2g04170 | 299 | Gene3D | Death Domain, Fas | 131 | 260 | IPR011029 | - | |
| Lomi2g04170 | 299 | ProSiteProfiles | Zinc finger RING-type profile. | 252 | 287 | IPR001841 | - | |
| Lomi2g04170 | 299 | Gene3D | - | 261 | 291 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04170 | K19042 | E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 118633 | Lomi11g01804 | Lomi2g04170 | |
| 122842 | Lomi2g04170 | Lomi5g01870 | |
| 324177 | Lomi2g04170 | Lomi1g00482 | |
| 333300 | Lomi1g00482 | Lomi2g04170 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr2:47256367 | Lomi5g01870 | Lomi-Chr5:30112052 | dispersed | |
| Lomi | Lomi-Chr2:47256367 | Lomi2g04171 | Lomi-Chr2:47270247 | tandem | |
| Lomi | Lomi-Chr10:1469649 | Lomi2g04170 | Lomi-Chr2:47256367 | transposed | |
| Lomi | Lomi-Chr1:4508493 | Lomi2g04170 | Lomi-Chr2:47256367 | wgd | |
| Lomi | Lomi-Chr11:26374890 | Lomi2g04170 | Lomi-Chr2:47256367 | wgd | |
| Lomi | Lomi-Chr2:47256367 | Lomi5g01869 | Lomi-Chr5:30102610 | wgd |