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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04174 ATGGCCTTCACATCAAAGGTTCACAATTTCTCCGGCGACTATCCAACTTCGGCAACCACCCTGCCAATGTGGTATGATGACACTTGTTCACAAAGTTTCTTAGATAATATTTATGGTGTCACAATGGTACAAGATGAGTATGATATTGCTACACCAACGTTATCTCGATCATCGTCATGGAAGCCTTCACTCCCCGAGAGATTCGGGGTTTCTGAGATGGTGGTTCCGACCTCACCAATCGGATGTAGTAGCTTAAATTATATAGGAAATGATTATCAAAAAGTTGAACAAGATGAATACGTTTCTAGTAATGGTGGTAGCTATGATACCAATTCATGGTCATCTTATCCCAACGATTGGGAAGCCGATTGCCAGAAAACGAGCAAAGAGGTTGAAGAACCGACATTGAAGATTGGGAGGTATTCAATGGGAGAAAGGAAGGACAAGATCATGAGGTATCTCAAAAAGAGAAACCAAAGGAACTTCAACAAGACCATTAAGTATGAATGTAGAAAGACATTAGCCGACAAGCGAATGCGAGTGAGAGGGAGGTTCGCAAAGAACAACAACGATCATCTTCATCACGATCATGATGATCATCATCAACCTTGTGAAGATCAAGTGCTTCCCAACATCAATACTACTACCAATAATCCTTCTGAAGAAAGCGTTGTATACACCAACAATTTTATGATGAAGCAGGATTATGATGAAGAGGAAGAATGGCTACAAGAAGCAATGGCTAGTTTATTGTATTCACCACAAATTAGTTAA 774 40.18 MAFTSKVHNFSGDYPTSATTLPMWYDDTCSQSFLDNIYGVTMVQDEYDIATPTLSRSSSWKPSLPERFGVSEMVVPTSPIGCSSLNYIGNDYQKVEQDEYVSSNGGSYDTNSWSSYPNDWEADCQKTSKEVEEPTLKIGRYSMGERKDKIMRYLKKRNQRNFNKTIKYECRKTLADKRMRVRGRFAKNNNDHLHHDHDDHHQPCEDQVLPNINTTTNNPSEESVVYTNNFMMKQDYDEEEEWLQEAMASLLYSPQIS 257
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04174 257 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515(InterPro)
Lomi2g04174 257 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 53 247 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lomi2g04174 257 Pfam CCT motif 146 188 IPR010402 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04174 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:47314279 Lomi8g02264 Lomi-Chr8:31824160 dispersed
Lomi Lomi-Chr1:4581941 Lomi2g04174 Lomi-Chr2:47314279 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00155 ACH,LST 1 206 C2C2-CO-like Transcription Factor family AT1G75540 52.632 6.59e-62 192.0
Lomi1g00259 ACH,LST 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.995 1.69e-134 388.0
Lomi1g00308 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 48.208 1.00e-80 244.0
Lomi1g00751 ACH,LST 272 400 C2C2-CO-like Transcription Factor family AT1G68520 35.659 2.67e-11 62.8
Lomi1g00792 ACH,LST 17 355 C2C2-CO-like Transcription Factor family AT5G57660 44.167 3.03e-78 242.0
Lomi1g02595 ACH,LST 305 388 C2C2-CO-like Transcription Factor family AT5G24930 39.286 2.00e-11 63.5
Lomi1g03401 ACH,LST 315 386 C2C2-CO-like Transcription Factor family AT5G24930 38.889 4.57e-10 58.5
Lomi1g04390 ACH,LST 1 96 C2C2-CO-like Transcription Factor family AT4G27310 55.67 2.20e-30 109.0
Lomi1g04438 LST 1 183 C2C2-CO-like Transcription Factor family AT4G38960 61.792 2.27e-84 246.0
Lomi2g00084 LST 1 183 C2C2-CO-like Transcription Factor family AT4G38960 62.376 1.14e-83 244.0
Lomi2g00120 ACH,LST 1 83 C2C2-CO-like Transcription Factor family AT4G27310 58.333 1.97e-29 107.0
Lomi2g00993 ACH,LST 190 276 C2C2-CO-like Transcription Factor family AT2G24790 39.08 5.87e-10 57.8
Lomi2g01764 ACH,LST 334 388 C2C2-CO-like Transcription Factor family AT5G24930 49.091 1.81e-11 63.5
Lomi2g03771 ACH,LST 12 355 C2C2-CO-like Transcription Factor family AT5G57660 44.837 4.47e-83 254.0
Lomi2g03822 ACH,LST 273 406 C2C2-CO-like Transcription Factor family AT1G68520 32.09 2.19e-10 60.1
Lomi2g04174 . 337 393 C2C2-CO-like Transcription Factor family AT5G24930 43.86 2.18e-09 55.5
Lomi2g04404 ACH,LST 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.479 4.72e-131 379.0
Lomi2g04507 ACH,LST 1 196 C2C2-CO-like Transcription Factor family AT1G75540 54.592 1.27e-63 197.0
Lomi3g00329 ACH,LST 5 355 C2C2-CO-like Transcription Factor family AT5G57660 44.909 6.66e-95 286.0
Lomi3g00727 ACH,LST 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.104 2.74e-86 258.0
Lomi3g00745 LST 1 224 C2C2-CO-like Transcription Factor family AT1G75540 51.293 7.29e-66 207.0
Lomi3g00806 ACH,LST 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.438 1.08e-133 384.0
Lomi3g01779 LST 2 401 C2C2-CO-like Transcription Factor family AT2G33500 39.246 5.53e-92 282.0
Lomi3g01962 . 10 269 C2C2-CO-like Transcription Factor family AT1G68190 40.288 7.69e-60 195.0
Lomi3g02842 LST 202 270 C2C2-CO-like Transcription Factor family AT2G24790 44.928 7.56e-12 62.0
Lomi3g03137 LST 11 328 C2C2-CO-like Transcription Factor family AT2G47890 44.063 1.45e-93 281.0
Lomi4g00255 LST 11 328 C2C2-CO-like Transcription Factor family AT2G47890 42.416 5.76e-91 275.0
Lomi4g00730 LST 192 270 C2C2-CO-like Transcription Factor family AT2G24790 40.506 7.31e-12 62.0
Lomi4g01707 LST 10 401 C2C2-CO-like Transcription Factor family AT2G33500 40.57 3.06e-93 286.0
Lomi4g02127 . 1 86 C2C2-CO-like Transcription Factor family AT3G21890 51.163 6.28e-26 91.3
Lomi4g02569 ACH,LST 1 372 C2C2-CO-like Transcription Factor family AT3G07650 54.787 1.66e-134 385.0
Lomi4g02621 ACH,LST 1 224 C2C2-CO-like Transcription Factor family AT1G75540 53.712 2.43e-67 211.0
Lomi4g02639 ACH,LST 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.681 1.97e-95 282.0
Lomi4g02953 ACH,LST 5 355 C2C2-CO-like Transcription Factor family AT5G57660 45.576 4.73e-96 288.0
Lomi5g01288 ACH,LST 284 326 C2C2-CO-like Transcription Factor family AT5G57660 55.814 3.34e-09 55.1
Lomi5g01761 LST 45 406 C2C2-CO-like Transcription Factor family AT5G24930 51.026 1.57e-96 291.0
Lomi5g02019 LST 3 105 C2C2-CO-like Transcription Factor family AT4G27310 48.571 2.69e-29 106.0
Lomi5g02120 ACH,LST 1 299 C2C2-CO-like Transcription Factor family AT1G78600 53.205 2.93e-93 276.0
Lomi5g02142 ACH,LST 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.641 6.55e-136 390.0
Lomi6g01396 ACH,LST 1 75 C2C2-CO-like Transcription Factor family AT4G27310 63.158 3.53e-29 107.0
Lomi6g01979 LST 289 400 C2C2-CO-like Transcription Factor family AT1G68520 40.876 2.16e-21 91.7
Lomi7g00489 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.21 2.37e-72 225.0
Lomi7g01239 ACH,LST 4 103 C2C2-CO-like Transcription Factor family AT5G54470 53.465 3.46e-29 107.0
Lomi7g01703 . 12 401 C2C2-CO-like Transcription Factor family AT2G33500 38.532 4.79e-73 233.0
Lomi7g01903 LST 289 393 C2C2-CO-like Transcription Factor family AT1G68520 39.535 1.12e-16 78.6
Lomi8g00025 ACH,LST 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 5.89e-10 57.4
Lomi8g00963 ACH,LST 11 347 C2C2-CO-like Transcription Factor family AT3G02380 48.843 2.52e-112 330.0
Lomi8g02264 ACH,LST 334 386 C2C2-CO-like Transcription Factor family AT5G24930 50.943 8.88e-11 61.2
Lomi9g00536 ACH,LST 1 319 C2C2-CO-like Transcription Factor family AT1G75540 43.62 5.38e-72 224.0
Lomi9g01347 ACH,LST 1 347 C2C2-CO-like Transcription Factor family AT3G02380 47.938 2.02e-111 327.0
Lomi10g00034 ACH,LST 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 5.04e-10 57.8
Lomi10g00948 ACH,LST 6 347 C2C2-CO-like Transcription Factor family AT3G02380 49.1 1.80e-110 325.0
Lomi10g02645 ACH,LST 316 386 C2C2-CO-like Transcription Factor family AT5G24930 43.056 4.11e-11 62.4
Lomi11g01061 ACH,LST 264 319 C2C2-CO-like Transcription Factor family AT3G02380 50.0 4.76e-10 57.4
Lomi11g01439 ACH 178 270 C2C2-CO-like Transcription Factor family AT2G24790 44.086 9.31e-13 65.9
Lomi11g01735 LST 45 406 C2C2-CO-like Transcription Factor family AT5G24930 49.479 2.38e-99 298.0
Lomi11g01894 LST 3 105 C2C2-CO-like Transcription Factor family AT4G27310 52.381 1.54e-30 109.0
Lomi11g01948 ACH,LST 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.548 4.12e-94 279.0
Lomi11g01963 ACH,LST 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.234 1.42e-134 387.0
Lomi11g02442 ACH,LST 287 401 C2C2-CO-like Transcription Factor family AT1G68520 44.828 2.06e-21 93.6
Lomi12g00452 ACH 276 336 C2C2-CO-like Transcription Factor family AT5G57660 49.18 2.57e-11 60.8
Lomi12g00816 ACH,LST 1 347 C2C2-CO-like Transcription Factor family AT3G02380 50.0 2.22e-118 345.0
Lomi12g01678 ACH,LST 1 319 C2C2-CO-like Transcription Factor family AT1G75540 42.522 1.59e-69 218.0
Lomi14g00263 ACH 267 347 C2C2-CO-like Transcription Factor family AT5G57660 38.272 3.71e-10 58.9
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lomi CCT 1.9e-18 CL0281 TR Others