Gene detail

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi2g04184	ATGAGCAGCTGGAGGACTTTGATTTTGAGAATCGGCGAGAAGTCCTCTGAATATGGTGGAACAATCGATTACAAAGACCACATTGATGCTTGTTTTGGTGTTGTTCGGCGTGAATTGGAGCATTCTCAAGATGAAATCATAAATTTTCTTCTACAATGTTCAGAGCAATTGCCTCACAAGGTTCCTCTGTACGGGACTTTGATTGGGTTATTGAACTTGGAAAATGAGGATTTTGTCAAGAAAATCTTGGAGAGTACTCAAAAGAATTTGCAGGATGCGCTTGACTCTGGAGATTGCAACAAGATTCGTGTATCATTACGGTTCCTAACTGTTTTGATGTGTAGCAAAGTCGTCCTACCAAGTTCGCTAGTGGTGATTTTTGAAACATTATTATCTTCTGCTGCAACTATAGTGGATGATGAGAAAGGGAACCCTTCATGGCAAGCCCGTGCTGATTTCTACATAATCTGTATTCTTTCCTGCCTTCCTTGGGGTGGATCCGAGCTTGGTGAGCAAATTCCGGAAGAGATTGAAAGAGTTATGGTTGGGATAGAAGCTTATTTAAGTATCAGAAGACATGTTTTCGATGTTGGTTTATCTGTGTTTGAGGACATCAACAAAATTGACAAACTTCACCATGAACAGGATTTCGTGGAAGACTTATGGGGTCGAATTCAAGATCTCTCCAAGAACAGTTGGAAACTTGAGAGTGTTCCGAGGCCACATCTTTTATACGAAGCACAACTAGTAGCTGGAAGGTCTCATGATTTTGGACCCATAAGTTGTCCCGAGCAACCCGATACCCCTGGAGCACTCTCTGGAGTTAGTTTTGGTAGACAGAAGCATGAAGCAGAACTGAAATATCCTCAAAGGATACGAAGGCTAAATATATTTTCTGCTAGTAAAACGGAGGATCTACAACCTATAGACCGCTTTGTTGTGGAAGAGTATTTATTGGATGTACTCTTTTTCTTGAACGGATGTCGAAAGGAAGGTGCTGCATGCATGGTTGGTCTACCAGTCCCTTTTCGATATGAGTATCTAATGGCCGAGACAATATTTTCTCAGCTTCTTTTATTGCCTCAGCCACCATTCAAGCCCATATATTACACACTTGTCATAATAGACCTTTGTAAGTCCCTTCCAGGTGCCTTCCCTGCAGTTGTAGCTGGGGCTGTCCGTGCTCTTTTTGATAGAATAAATGAGTTGGATATGGAGTGTAGGACCCGTCTCATCCTTTGGTTCTCACACCATTTATCAAACTTTCAATTCATTTGGCCTTGGGAAGAATGGGCTTATGTTTTGGAGCTTCCAAATTGGGCCCCACAACGTGTGTTTGTCCAGGAGGTTCTGGATAGAGAAGTCCGATTATCATACTGGGATAAAGTAAAGCAGAGCATTGAAACCACTCCAGCTTTAGAGGAGTTACTTCCTCCAAAAGGCGTGCCTGACTTTAGATATGGTATAGAAGATAATGATAAAACCGAATACACGCTTTCGACAGAACTTAATGCTATGGTGAAAGGAAGAAAAACTGCACGTGATGTTGTTATCTGGCTGGAAGAAAGTGTAATCCCAGTCAATGGACTGGATGTTGCTCTTAGAGTAGTTGTTCAGACCCTTCTGGACATTGGATCAAAGAGTTTTACTCATTTGATTACTGTGTTAGAGAGATATGGACAAGTTATTGCTAAACTTTGTCCAAATGAAGAAACACAAATTATGTTAATTGCGGAAGTCAGTGAATTTTGGAAGAATAGTGCTCAGACAGCTGCCATAACAATTGACAGAATGATGGGTTATCGGCTTATTTCTAATTTGGCTGTTGTTAAATGGGTCTTTTCTTCACCAAACATTGACCTGTTCCACACCACTGATCGTTTGTGGGAGATACTCAGAAATGCACTTAATAAGACATATAATCGTATTACGGATCTAAGGAAAGAGATAACTCAGTTAAAAAGGAGTGTTCTAAAAGCCGAGGAAATTGCTGCCAAGGCTAAAGCTGAGTTGGATGCTGCTGAAACGAAGCTTATGCTTGTGGATGGTGAGCCTGTTGTTGCTGAAAATCCTGCCAGGATGAACCGTTTGAAATCAAATGCAGAAAAGACAAAAGATGAGGAGGTGTCGACCCGTGAATCATTAGAGTCGAAGGAAGTTCTTTTTGCACGAGCTCTTGAAGAAAATGAGGCCTTGTTCCTCTCGTTATACAAAAATTTCTCCAATGTTTTGGAGGAACGTCTCCATGAGACATTTGGAGAGAAAACCTCAGAGCCAACTGGTGATTCAGATGCAATGGCTATAGATGAAGAAGAAACACCTGCAATGGAGATGGATAAAGAAAATGGTATTTCTAAAAGAAATGTTGGCACTGAATATACTATCAGCGAGAAAGAACAATGGCGTTTGACAACTTTGGGTTATGTCAAGGCCTTTTCAAGACAATATGCTTCTGAGATTTGGCCACACATGGATAAGTTGGAGCAGAAAGTACTAACACAAAGTGTTCATCCTCTATTCAGAAAAGCCGTTTATTCTGGTTTGCGTCGATACACCGATAAATGA	2565	41.01	MSSWRTLILRIGEKSSEYGGTIDYKDHIDACFGVVRRELEHSQDEIINFLLQCSEQLPHKVPLYGTLIGLLNLENEDFVKKILESTQKNLQDALDSGDCNKIRVSLRFLTVLMCSKVVLPSSLVVIFETLLSSAATIVDDEKGNPSWQARADFYIICILSCLPWGGSELGEQIPEEIERVMVGIEAYLSIRRHVFDVGLSVFEDINKIDKLHHEQDFVEDLWGRIQDLSKNSWKLESVPRPHLLYEAQLVAGRSHDFGPISCPEQPDTPGALSGVSFGRQKHEAELKYPQRIRRLNIFSASKTEDLQPIDRFVVEEYLLDVLFFLNGCRKEGAACMVGLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIIDLCKSLPGAFPAVVAGAVRALFDRINELDMECRTRLILWFSHHLSNFQFIWPWEEWAYVLELPNWAPQRVFVQEVLDREVRLSYWDKVKQSIETTPALEELLPPKGVPDFRYGIEDNDKTEYTLSTELNAMVKGRKTARDVVIWLEESVIPVNGLDVALRVVVQTLLDIGSKSFTHLITVLERYGQVIAKLCPNEETQIMLIAEVSEFWKNSAQTAAITIDRMMGYRLISNLAVVKWVFSSPNIDLFHTTDRLWEILRNALNKTYNRITDLRKEITQLKRSVLKAEEIAAKAKAELDAAETKLMLVDGEPVVAENPARMNRLKSNAEKTKDEEVSTRESLESKEVLFARALEENEALFLSLYKNFSNVLEERLHETFGEKTSEPTGDSDAMAIDEEETPAMEMDKENGISKRNVGTEYTISEKEQWRLTTLGYVKAFSRQYASEIWPHMDKLEQKVLTQSVHPLFRKAVYSGLRRYTDK	854

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi2g04184	854	FunFam	Nuclear cap-binding protein	296	481	-	-
	Lomi2g04184	854	SUPERFAMILY	ARM repeat	294	476	IPR016024	-
	Lomi2g04184	854	Gene3D	-	490	846	-	-
	Lomi2g04184	854	Pfam	MIF4G like	342	467	IPR015172	GO:0016070(InterPro)
	Lomi2g04184	854	Pfam	MIF4G like	525	819	IPR015174	GO:0016070(InterPro)
	Lomi2g04184	854	Coils	Coil	698	718	-	-
	Lomi2g04184	854	SUPERFAMILY	ARM repeat	2	296	IPR016024	-
	Lomi2g04184	854	SUPERFAMILY	ARM repeat	478	843	IPR016024	-
	Lomi2g04184	854	Coils	Coil	636	684	-	-
	Lomi2g04184	854	SMART	if4-15	5	229	IPR003890	GO:0003723(InterPro)\|GO:0005515(InterPro)
	Lomi2g04184	854	PANTHER	CAP BINDING PROTEIN	4	849	IPR027159	GO:0000184(PANTHER)\|GO:0000339(InterPro)\|GO:0000339(PANTHER)\|GO:0003729(PANTHER)\|GO:0005634(PANTHER)\|GO:0005845(PANTHER)\|GO:0005846(InterPro)\|GO:0005846(PANTHER)\|GO:0006406(InterPro)
	Lomi2g04184	854	Pfam	MIF4G domain	24	220	IPR003890	GO:0003723(InterPro)\|GO:0005515(InterPro)
	Lomi2g04184	854	Gene3D	-	3	269	-	-
	Lomi2g04184	854	Gene3D	-	295	481	-	-
	Lomi2g04184	854	FunFam	Nuclear cap-binding protein subunit 1	3	269	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi2g04184	K12882	nuclear cap-binding protein subunit 1

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:4710849	Lomi2g04184	Lomi-Chr2:47420569	wgd