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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04200 ATGTTGCTTCACAATTGTAGCTTTTTATCTACTTCAAGTCGATTATTACATTCCATAAATCAAATCAACAAAATCGATTACGATAATGATTATACGACTACTAATCGTGTTTACTCGATAACAACAACAAGAAGAAGAACGATCAAAGTTTCGTCAACGCTTGCGTTTATTAATGTTGGAACTGATATGATTGTTGAAATTGGTCATAATAAGGCGCTGATAGCAGCAACTGTTTGTGGTGCATTTGGACAATTGGTGAAACCTTTTGCAGCTTCTATATTGTATCAAAAAGATTTTGATCCAAAATCTGTGTTTCAAGCTGGAGGCTTTCCTTCAACCCATTCTTCTGCAGCTGTGGCTACTGCAATGTCTGTTGGTTTGGAAAGGGGTTTCTCGGATTCAGTTTTCGGTTTGGCAGTTGTCTTTGCTGCTCTTACTATGTATGATGCACAGGGTGTTAGAAGGGAAGTGGGAGTTCATGCAAGAACGTTAAACAAAGCATTAACCACGAACCAACCAAATACATATTCCTCATCCAAAAATTTGTTGTCCAATCCAGGATCTGGCAACTCTCTCAAGTTGGAGGAAACAAATAATCTTAGGCCAGTTCTTACATCTGATAGGAGAGTGAACTCATCTTGCTTAACCGATGACATTGGAAATGGTTCAGAAAGTAGTGGTCCTATTTCTAGTCCGCTGAAAGAATCAATTGGTCATACTGAAATTGAAGTCGCCGCAGGTGCCTTGTTGGGCTTAGTGGCAAGTTTGGTAGTCTACTCACTATGA 786 39.19 MLLHNCSFLSTSSRLLHSINQINKIDYDNDYTTTNRVYSITTTRRRTIKVSSTLAFINVGTDMIVEIGHNKALIAATVCGAFGQLVKPFAASILYQKDFDPKSVFQAGGFPSTHSSAAVATAMSVGLERGFSDSVFGLAVVFAALTMYDAQGVRREVGVHARTLNKALTTNQPNTYSSSKNLLSNPGSGNSLKLEETNNLRPVLTSDRRVNSSCLTDDIGNGSESSGPISSPLKESIGHTEIEVAAGALLGLVASLVVYSL 261
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04200 261 CDD PAP2-like 72 160 - -
Lomi2g04200 261 PANTHER ACID PHOSPHATASE-VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 57 260 IPR003832 -
Lomi2g04200 261 MobiDBLite consensus disorder prediction 170 234 - -
Lomi2g04200 261 Pfam Divergent PAP2 family 69 253 IPR003832 -
Lomi2g04200 261 MobiDBLite consensus disorder prediction 170 233 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04200 K09775 uncharacterized protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
324165 Lomi2g04200 Lomi1g00444
333312 Lomi1g00444 Lomi2g04200
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:4050713 Lomi2g04200 Lomi-Chr2:47515100 wgd