AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04205 ATGAATATCGAAATTATTGGGAGGCACGCGCTGCTCTTCGACGATGATACCAACGCCGCTTTCATAAACTCCGACGACGCACTTGTTGAATGGAATTCGCTGCTGATCGACCGTTACGACGTCCGTCATCTTCTTTCCAGCCCTCCGCCGTCTCGACGGCGGCGCAATCTGCAAACGTCTCACTCATCTTCCACCGATGCCGACATCGATTATGAACGATATCTCGATCTCCCCTCACCTTCCGACGAACAAGAAGAAGATGCAAAACCAGAACCTGTGGGTGGATTTAATGCTGTTCCTTTTTCTTATGGAAACTATGAGGATTTTAATGATAAAAAGATCGCCGAGGCTGAATCAGAAATCTCCGGATTTCAACCCCCCTTTCCTGTCCCTGACAGCCTGATTCAAAACTTGCCTCCTACGGAGAAGGTACATCAGATTATTGCAAGGACTGCTCTTTTTGTCAGCAAAAATGGAGGGCAATCTGAGATTGTTTTGAGGGTGAAGCAAGGAGACAACCCAACCTTTGGGTTCTTAATGCCTGACCATCACCTACATCCGTACTTTAGGTTTCTGGTTGATCACCAAAATCTTCTGCAGTCGAAAGACGATGGACGGGCTGATAATGAGAAAACGTCCACTACTGAGAATGCTTCAGGAGCTGGAGCATTGTCATTGCTTGGTTCTGTATATGGCACTGGTGAAGATGAGGACGGGGGAGTGGAATATGTGTCATCATCTGGAGGATATGTATCCGGGAAAAATGTAAATGGCACCGACTCTCATGCACCAGGAAAAGCTATTGTGACAGCTGGCAAAGATGAACCTGTATCTAAGCATTCTCTTCCATCCAAGGAAGATACCCCTTTTCAGAGAAGGAGCCCTTCACTAAATGCATTGAAAGCTGAACGAACTAGTAGTATGAGAAAAGGTGAGTCCTTGGGTTCACTTTCTGCTGTTCCAGATAAGTTGCGGGCTTCTTCTCTTCCTCCAATTCCCAAGACTGAGCAAATGGTCCTGGATCCTCCATCTGACATGAAACGGTTAGTTGACAAAATAGTAGAGTTCATCATCAAGAATGGGAGGCAGTTTGAGGCTGTACTTATGGAACAAGATCGTGGTCATGGAAGATTTCCATTCATACTCCCATCTAATATATTCCATCCTTACTATCTAAAAGTTCTCCAGCAAGCCCAGGAGCCGAAGTCAACTGTCAAGAGTCTGCACAATGATAAGGAAGGTTTCAGAGGACATATTCCGAACAGGAAAAGGTCTATGTCAAGGGAGAATGAGAATAGAAGGGTGGAATCTGATGATATACCACTTGATTCTGAAAGGAAAGAGAAGTTTAAGATGGTAATTAACAAAACTAAAAAGGAAGGTTCAGAAGCGCCAGCTAAAGCCACACAACCCCAACTTGGAGTCCAGGTGGATGCTGCTCAAGCAGCAGCTATTCTTCAGGCTGCTACAAGAGGAATCAAACTTCCAGATTTAGGAATTCTCTCTGGGCAACCCTCTAATGAAGCTGAATCCTTTGAAGCACAAATGAGTCATGAACAGAAATTAAAGGCAGAGAGGTTAAAACGGGCTAAGATGTTTGTGGCTCAGCTGAAAAGTGGAGGCGCTCCATCAAAAGCTGATCCCTCACGTGGCTTATCAGCCGAGCCACAAGGATCAGGGGCTGACAACCGCCTTGTAGCCAAAGAAAGAGAGAGGAGCACAACCCCTTTAAATTACGACAGTGCAGACAAGAAAGTAAAATCTGAAAAGGAACATTTGAATGAAGAAAGGCGATCAAGGAGGAAGTACCGAGCTAGAGCGGAAACAGCAGAAGCGCTTGAAGACGATGAAGAAGATGATGGGGAGGTTGATGAGAGAGAAGGAAAAAGGTCACATAGACACCACACGAAGAAGCACCGATCTCGTAATCGTTCAGTTGAAGTTGACTGTCAAGAAAAAGATGATGAAGTAAGAGATTATAAGCATGTAAAGAGAAGGCATCGATCTCATCGTACTTCTCAGAAACATGATGATATTGACAAAAGCAATGAAGAAAGGCATCATAAGTCATCAAGAAAGAAGAAGCATCGATCTCCTAGTTCGTACGAGGAAGATGATCATGAAAGTGGCCATGAATATTCCAGAAAGATGCCCCGATCACGCCATTCTTCACATGAAGAGTCTGATGATGGAGTTGACAGCGACCACAAATATTCTAGGAAAAAGCATAAACATAGATCTCACAGGACTTCTCATCACAGTAGAGATAAGCATAGGAAAAGTCACTCTTCTAAACATAAACAGAAGCTTGATGTCTCTTCAGAAGAGGGACGGGGGGACCATAATAAGGCTTATAGGCATAAAAAGGGATTGAGCTCGGATAGAGAAGAACTGGAAGAAGGGGAGATCAGCTCAAAATCGTCAGGTCAGTCGAGAGGGAAACAGCTGGTTGATGGTGCTAGTCAAAAACCTTTGATGGATGTATCAAGTACTCATCAAGGTCGGAGATCGCCAAGTCAGCCCATTGAGACAACTGAGGTTCCTGATGACCTCAGGGCCAAAATCAGAGCAATGTTGATGTCCACAATGTAA 2592 44.6 MNIEIIGRHALLFDDDTNAAFINSDDALVEWNSLLIDRYDVRHLLSSPPPSRRRRNLQTSHSSSTDADIDYERYLDLPSPSDEQEEDAKPEPVGGFNAVPFSYGNYEDFNDKKIAEAESEISGFQPPFPVPDSLIQNLPPTEKVHQIIARTALFVSKNGGQSEIVLRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQNLLQSKDDGRADNEKTSTTENASGAGALSLLGSVYGTGEDEDGGVEYVSSSGGYVSGKNVNGTDSHAPGKAIVTAGKDEPVSKHSLPSKEDTPFQRRSPSLNALKAERTSSMRKGESLGSLSAVPDKLRASSLPPIPKTEQMVLDPPSDMKRLVDKIVEFIIKNGRQFEAVLMEQDRGHGRFPFILPSNIFHPYYLKVLQQAQEPKSTVKSLHNDKEGFRGHIPNRKRSMSRENENRRVESDDIPLDSERKEKFKMVINKTKKEGSEAPAKATQPQLGVQVDAAQAAAILQAATRGIKLPDLGILSGQPSNEAESFEAQMSHEQKLKAERLKRAKMFVAQLKSGGAPSKADPSRGLSAEPQGSGADNRLVAKERERSTTPLNYDSADKKVKSEKEHLNEERRSRRKYRARAETAEALEDDEEDDGEVDEREGKRSHRHHTKKHRSRNRSVEVDCQEKDDEVRDYKHVKRRHRSHRTSQKHDDIDKSNEERHHKSSRKKKHRSPSSYEEDDHESGHEYSRKMPRSRHSSHEESDDGVDSDHKYSRKKHKHRSHRTSHHSRDKHRKSHSSKHKQKLDVSSEEGRGDHNKAYRHKKGLSSDREELEEGEISSKSSGQSRGKQLVDGASQKPLMDVSSTHQGRRSPSQPIETTEVPDDLRAKIRAMLMSTM 863
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04205 863 MobiDBLite consensus disorder prediction 738 766 - -
Lomi2g04205 863 SUPERFAMILY Surp module (SWAP domain) 323 398 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi2g04205 863 MobiDBLite consensus disorder prediction 51 65 - -
Lomi2g04205 863 ProSiteProfiles SURP motif repeat profile. 349 391 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi2g04205 863 MobiDBLite consensus disorder prediction 697 737 - -
Lomi2g04205 863 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi2g04205 863 MobiDBLite consensus disorder prediction 405 442 - -
Lomi2g04205 863 MobiDBLite consensus disorder prediction 642 662 - -
Lomi2g04205 863 SMART DRY-EERY-2 1 107 IPR019147 -
Lomi2g04205 863 Coils Coil 593 620 - -
Lomi2g04205 863 MobiDBLite consensus disorder prediction 564 611 - -
Lomi2g04205 863 MobiDBLite consensus disorder prediction 253 319 - -
Lomi2g04205 863 MobiDBLite consensus disorder prediction 767 803 - -
Lomi2g04205 863 MobiDBLite consensus disorder prediction 824 844 - -
Lomi2g04205 863 MobiDBLite consensus disorder prediction 538 851 - -
Lomi2g04205 863 MobiDBLite consensus disorder prediction 673 687 - -
Lomi2g04205 863 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi2g04205 863 Pfam Surp module 347 397 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi2g04205 863 SMART surpneu2 347 400 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi2g04205 863 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi2g04205 863 Gene3D Surp module 334 404 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi2g04205 863 MobiDBLite consensus disorder prediction 47 72 - -
Lomi2g04205 863 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lomi2g04205 863 MobiDBLite consensus disorder prediction 288 313 - -
Lomi2g04205 863 Pfam Alternative splicing regulator 3 86 IPR019147 -
Lomi2g04205 863 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 841 IPR040397 GO:0000395(PANTHER)
Lomi2g04205 863 SUPERFAMILY Surp module (SWAP domain) 126 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04205 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
324161 Lomi2g04205 Lomi1g00439
333316 Lomi1g00439 Lomi2g04205
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:4011707 Lomi2g04205 Lomi-Chr2:47551519 wgd