AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04217 ATGAAGGTTCAATTCGCTCGTAATTTAAACTTAGCGTTGAGCTACCGCACAATTGTCGGTTATTCGAAAGTTAGGGTTTCTAAGAAGAATTATATTTTTGGTCGGTTTAACTTATCAACTGGTGTTGCTATTGATCCAGTGAAGAGTATGGGTTCACAAGCGGCGATTGAGGTTGAATGGCCGGCGAATAAAGTTAGAGATAGTTTTATTAAGTTTTTTGAAGAAAAGAATCATGTGTATTGGAAATCAAGTCCTGTTGTTCCTGTTAATGATCCCACACTTCTGTTTGCTAATGCTGGTATGAATCAGTTCAAGCCTATCTTTTTGGGTACTGCTGATCCTAACACTTCGTTGAGCAAACTGACTCGTGCCTGCAACACACAGAAGTGTATCCGAGCTGGCGGGAAGCATAACGATCTTGATGATGTTGGGAAAGACACTTATCATCACACCTTCTTTGAGATGCTTGGTAACTGGTCATTTGGTGATTATTTTAAAGAGGAAGCCATTGGATGGGCATGGGAGCTTCTCACAACGGTCTTTAAGCTACCTACTGATCGAATTTATGCTACTTATTTTGGCGGTGATGAAAAATTGGGCCTTCCTGCTGACGATGAAGCTAGAAATATATGGCTCAAATATCTTCCATCTGCACGTGTTTTGCCTTTTGGCTGTAAAGACAACTTCTGGGAGATGGGTGATACTGGGCCATGTGGACCTTGTACTGAAATACACTTCGATAGAATTGGTGGTCGTGATGCTGCAGATTTGGTGAACAATGATGACCCTACATTGATCGAAATTTGGAATAATGTGTTTATTCAGTTTAATAGGGAAGCTGATGGTTCCTTGAAACCTCTACCTGCCAAACACGTGGATACTGGGATGGGTTTTGAAAGATTGACTTCAATTCTTCAGAACAAGATGAGCAACTATGATACTGACGTCTTCATACCTATTTTTGATGCAATCCAACATGCAACTGGCGCTAGACCATATTCAGGCAAAGTGGGTCCAGATGATGTTGACAGAATTGACATGGCGTACAGAGTCGTTGCTGACCACATTAGAACTCTCTCATTTGCCATAGCAGATGGTTCACGTCCAGGCAATGAAGGCCGTGAATATGTTCTGCGGCGTATTCTTCGCCGAGCCGTACGTTATGGAACTGAAGTACTGAAAGCACAGCAAGGATTTTTCAATGGATTGGTAAAAGTTGTAGTGGACTCAATGAGTCATGTTTTTCCTGAGCTAAAACAACAAGAGGCACACATTAGAGAGATTATAGCTGAAGAGGAAGCAAGTTTTGGGAGGACGTTACTTCATGGAATTGAGAAGTTTAAAAGGACAGTTCAAGATGTTCAGGGGAAGAAATTTAGTGGACAGGATGCATTTGTGTTGTGGGATACTTTTGGATTTCCATTGGATCTGACACAGCTGATGGCAGAAGAAAGGGGGTTGGAGGTTGATGTTGATGGATTTAATATTGCTATGAATGAAGCTAGAGAAAGATCAAGGAACGCCCAGAATAAGCAAGCTGCTGTTGCGATTGTCATGGATGCAGATGCGACTTCAGCACTGCATAAAAGAGGGGTGCCCACTACAAATGATAGCTTTAAGTTTGAATGGTTGAAGGAACATGAAAGTGAGATAAAAGCCATTTACACAGGCACCGAGTACGTGGAACGTGCTGATGCTGGTGTTGATGTTGGTATAATTCTTAAGAGCACCAGTTTTTATGCTGAGCAAGGTGGTCAGATATATGATACTGGACTACTTGAAGGCTCCTTTGGATCATTTGAAGTTTGTAATGTTCAAGTTTATGGTGGTTTTGTGATACATCTTGGTAAAATTACTGGGGAGTCTGCCAAGTTTCATGTGGGTGATAAAGTAATTTGCAAGGTTGACTATGAAAGGCGTCGACGCATTGCTCCCAATCATACCTGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGACTCATGTCGATCAGAAAGGATCCATTGTTCTTCCAGAAAAATTAAGATTTGACTTCTCCCATGGGAAACCCGTAAAACCAGAGGACCTCCGCAGAATTGAATCCATTGTGAATGAACAAATTAAATCTGAATTAGATGTTTCTGCAAAGGAGGCGAGCCTGGCTGATGCCAAGCGAGTTAATGGTTTGCGGGCTGTTTTTGGTGAAGTGTATCCTGATCCAGTTAGGATTGTTGCAATTGGGCGACAAGTGGATGATCTTTTGGCTGATCCTGAAAACGAAGAGTGGGTGTCTATATCTGCAGAACTCTGTGGAGGGACCCATATTTCAAATACACGAGAGGCGAAGGCTTTTGCACTTCTTTCTGAGGAGGGAATTGCCAAGGGGATTCGAAGAGTTACTGCTGTCACAACAGAGTATGCTTTTGAGGCTATTAAAAAGGCAGCTGAACTCGAGCAGGAAGTTGATCAGGCATCGAAGCTGGAAGGAAGCCTTCTTGAACAGAAAGTGACCTCTTTAAATGGTCAAGTAGAGTCCGCCTCTATTCCATCAGCAAAGAAGGCTGATTTAAAGGCTAAAATCTCACTCCTTCAGAATTTAGTAATAAAAGCAAAAAAGAAGACTGCGGAAGAGAACATTCACAAAGCTGTTGAGGCTGCAATAAAGGCAGCGGAAGTTGCTTCTTCTGAAGGGGTACCCTTTTGCATTTCACATGTTTCTGTGGGATCGGATACTGCTGCCATTCGTGAAGCAGTTGTGAAAGTCATGGAACAGAAGGGAATGGCGGTGATGGTTTTTAGCACCGATGAACAATCGAAGAAGGCCTTAGTTTGTGCTGGTGTGCCAGAAAAAAGTGATGAAAGCAAACAGTTGAAGGTTTTGGAGTGGCTGAAGGCGGCATTGAAGCCACTAGAAGGTAAAGGTGGTGGAGGGAAAGGTGGTCTCGCTCAAGGCCAGGGACCGGATATAAAGCATGTAGACGAAGCAATAGATGTTGCCAAGTCATTTGCAGCACTGAAACTAGGCTGA 3015 42.75 MKVQFARNLNLALSYRTIVGYSKVRVSKKNYIFGRFNLSTGVAIDPVKSMGSQAAIEVEWPANKVRDSFIKFFEEKNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTTVFKLPTDRIYATYFGGDEKLGLPADDEARNIWLKYLPSARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAADLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFIPIFDAIQHATGARPYSGKVGPDDVDRIDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDSMSHVFPELKQQEAHIREIIAEEEASFGRTLLHGIEKFKRTVQDVQGKKFSGQDAFVLWDTFGFPLDLTQLMAEERGLEVDVDGFNIAMNEARERSRNAQNKQAAVAIVMDADATSALHKRGVPTTNDSFKFEWLKEHESEIKAIYTGTEYVERADAGVDVGIILKSTSFYAEQGGQIYDTGLLEGSFGSFEVCNVQVYGGFVIHLGKITGESAKFHVGDKVICKVDYERRRRIAPNHTCTHMLNFALREVLGTHVDQKGSIVLPEKLRFDFSHGKPVKPEDLRRIESIVNEQIKSELDVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRQVDDLLADPENEEWVSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTEYAFEAIKKAAELEQEVDQASKLEGSLLEQKVTSLNGQVESASIPSAKKADLKAKISLLQNLVIKAKKKTAEENIHKAVEAAIKAAEVASSEGVPFCISHVSVGSDTAAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPEKSDESKQLKVLEWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG 1004
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04217 1004 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 60 809 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Lomi2g04217 1004 CDD AlaRS-core 62 308 - -
Lomi2g04217 1004 Gene3D - 528 635 - -
Lomi2g04217 1004 PRINTS Alanyl-tRNA synthetase signature 374 387 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi2g04217 1004 PRINTS Alanyl-tRNA synthetase signature 293 306 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi2g04217 1004 PRINTS Alanyl-tRNA synthetase signature 138 149 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi2g04217 1004 PRINTS Alanyl-tRNA synthetase signature 266 277 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi2g04217 1004 PRINTS Alanyl-tRNA synthetase signature 350 366 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi2g04217 1004 SMART tRNA-SAD-4 737 796 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Lomi2g04217 1004 Gene3D - 636 812 - -
Lomi2g04217 1004 FunFam Alanine--tRNA ligase, cytoplasmic 59 309 - -
Lomi2g04217 1004 Pfam tRNA synthetases class II (A) 64 639 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Lomi2g04217 1004 Pfam DHHA1 domain 865 998 IPR003156 GO:0003676(InterPro)
Lomi2g04217 1004 Gene3D Bira Bifunctional Protein; Domain 2 61 309 IPR045864 -
Lomi2g04217 1004 FunFam Alanine--tRNA ligase, cytoplasmic 636 811 - -
Lomi2g04217 1004 Hamap Alanine--tRNA ligase [alaS]. 60 1003 IPR023033 GO:0004813(InterPro)
Lomi2g04217 1004 NCBIfam alanine--tRNA ligase 64 982 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Lomi2g04217 1004 SUPERFAMILY Translation proteins 561 635 IPR009000 -
Lomi2g04217 1004 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 313 513 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Lomi2g04217 1004 FunFam Alanine--tRNA ligase 891 999 - -
Lomi2g04217 1004 FunFam Alanine--tRNA ligase 534 634 - -
Lomi2g04217 1004 SUPERFAMILY ThrRS-AlaRS common domain 635 807 IPR018163 GO:0000166(InterPro)
Lomi2g04217 1004 Coils Coil 803 830 - -
Lomi2g04217 1004 SUPERFAMILY Class II aaRS and biotin synthetases 61 312 IPR045864 -
Lomi2g04217 1004 Coils Coil 491 511 - -
Lomi2g04217 1004 Coils Coil 849 869 - -
Lomi2g04217 1004 PANTHER ALANYL-TRNA SYNTHETASE 57 1000 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Lomi2g04217 1004 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 737 795 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Lomi2g04217 1004 Gene3D - 889 999 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04217 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
324154 Lomi2g04217 Lomi1g00430
333323 Lomi1g00430 Lomi2g04217
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3845014 Lomi Lomi2g00028 Lomi-Chr2:279036 Lomi2g04217 Lomi-Chr2:47659684
3846426 Lomi Lomi5g01736 Lomi-Chr5:28908568 Lomi2g04217 Lomi-Chr2:47659684
3854306 Lomi Lomi1g00430 Lomi-Chr1:3893170 Lomi2g04217 Lomi-Chr2:47659684