AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04219 ATGGGTTGCATCAAAGCTGGTGGAAAAGAAGAAGAAGAAGAAAGAAGAACACAATCGTCAATTGTAAATGATGCGTTGCTATTAACAACCATGTGTCTCATTGGTCTATCGGTTGATGTTCATATCAAGGATGGTTCTGTTTATTCTGGAATCTTCCACACTGCTTGTGTTGATGACCGCTATGCTATTGTGTTGAAGCGAGCAACGATGGTCAAGAAAGGAAGTTGTAATTCAAATGTGGCCAATGATGATGTGATAGAAACACTTATAATCCAATCGAAGGATCTTGTTCAAGTGGTTGCAGAGAGAGTATTACTTCCATCAGACGGTTCTGCTGGACATGAAATTGGGGACGAGACAGGTGGTGTTTCATGCACCTTTCCTTCTAATGGAACTTCATTGATAGACTCAAATCAAACGACTAGCAAGTCAAATGTTTGTCAACCACATATTAGTTCAAGATGCTCCTCTGGAACTGAGAACGGGTGTGCTAATGGATCTAGACCGGAGGTTACCAATGGATCCAGACCAGAAGTCAATAGAAATGCAAATGCTCATGAGGTTCAAGCAAAAACGTCTAAAGTTAATGGACCTTCTTCTCCTGTCTCTTCAGAACCATTTGTCAGTTCATCATCAACTCCAATTGAAACCGTCACTTCCAAAATTTCAAACTGTAATCAAACCGCCAAGGAGTTTAAACTTAACCCTGGAGCAAAAATCTTTTCTCCATCGTTTTCAAATAAGAGATCACCGACCCCTCCAGCAATGCCGATGGGTGCAAATCTTGCATACATTCCCGAAACTTATCAAGCCGTCCCAGTTGCCACTCCACAACTGGAAGTTGAAATAAGCCCATATGCTCCTCGTTCCTTGCCTGTTAAGTTTGTTCCATATGGAGGCAACGATGTACAACATCCTCCGCCTATTGTTGGATATATGACAAATAGGAGTCAACCAGTTAGATACGCTGGGCAGTATCATCCAGTTCAGACAGCACCGACTTATGTCCAGCCAAGCCCTCAGAATGTAATGGTTGGAAGATTAGGACCGGTTGTCTATGTTCATCCAGTTTCTCAAGACTTGATCCCGAGCACAACTAGCTACCCTCAAATGTCTACGTGCTCTATCTTAACTCCGCACCAAGTCCATGTTCCTAAACACCAAGGTAATGGTCCGAGTCAAGCATTGCAGCTATGTACAAATCCTTCGTTTATAGCTGGTGGTGGTGGTCAGGCACCGTTTGTTTTGCCAAGTCACATTCCCATTTCACAACCACCTTACCCTGTGATCCGCCCGATCCCAGTCCCTGGATCACACAGTTTTTTAGTGTCAAAGTTTTCTTAA 1344 43.15 MGCIKAGGKEEEEERRTQSSIVNDALLLTTMCLIGLSVDVHIKDGSVYSGIFHTACVDDRYAIVLKRATMVKKGSCNSNVANDDVIETLIIQSKDLVQVVAERVLLPSDGSAGHEIGDETGGVSCTFPSNGTSLIDSNQTTSKSNVCQPHISSRCSSGTENGCANGSRPEVTNGSRPEVNRNANAHEVQAKTSKVNGPSSPVSSEPFVSSSSTPIETVTSKISNCNQTAKEFKLNPGAKIFSPSFSNKRSPTPPAMPMGANLAYIPETYQAVPVATPQLEVEISPYAPRSLPVKFVPYGGNDVQHPPPIVGYMTNRSQPVRYAGQYHPVQTAPTYVQPSPQNVMVGRLGPVVYVHPVSQDLIPSTTSYPQMSTCSILTPHQVHVPKHQGNGPSQALQLCTNPSFIAGGGGQAPFVLPSHIPISQPPYPVIRPIPVPGSHSFLVSKFS 447
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04219 447 MobiDBLite consensus disorder prediction 151 212 - -
Lomi2g04219 447 PANTHER ATAXIN 2-RELATED 149 402 IPR045117 GO:0003723(InterPro)|GO:0003729(PANTHER)|GO:0010494(PANTHER)|GO:0034063(PANTHER)
Lomi2g04219 447 Pfam Ataxin 2 SM domain 23 102 IPR025852 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04219 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
324152 Lomi2g04219 Lomi1g00428
333325 Lomi1g00428 Lomi2g04219
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3854304 Lomi Lomi1g00428 Lomi-Chr1:3881197 Lomi2g04219 Lomi-Chr2:47673346