AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04224 ATGCATGATTTTTGCTTTACGATCCCGTATGGAATGATAGTATTTTTTGGTGGGATTATTGGGTTCGCAAGAAAAGGTAGTACGACGTCGTTGGCCGGTGGTGTAGGCACTGGATTGTTGCTATTTCTTGCATCGTATCTTACTCTCAATGCTTTCCACAAGCGAAAGAATTCATGGTTTGGGTTGATTCTTGAAACTGTTATTGCTGCTGCCCTTACATGGTTTATGGGACAGCGATACGCTGAAACTGCTAAGATAATGCCTGCTGGTGTTGTTGCTGGTATTAGTGGATTAATGACAGCATTTTATCTCTATAAGATTGTGACAGGAGGTAACCATTTTTCGGCCAAGACAGAATGA 360 41.67 MHDFCFTIPYGMIVFFGGIIGFARKGSTTSLAGGVGTGLLLFLASYLTLNAFHKRKNSWFGLILETVIAAALTWFMGQRYAETAKIMPAGVVAGISGLMTAFYLYKIVTGGNHFSAKTE 119
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04224 119 Gene3D - 1 111 IPR044890 -
Lomi2g04224 119 PANTHER TRANSMEMBRANE PROTEIN 14, 15 1 108 IPR005349 GO:0009706(PANTHER)|GO:0015245(PANTHER)|GO:0015908(PANTHER)|GO:0016020(InterPro)
Lomi2g04224 119 Pfam Transmembrane proteins 14C 6 103 IPR005349 GO:0016020(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04224 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3827784 Lomi Lomi2g04224 Lomi-Chr2:47717060 Lomi3g02344 Lomi-Chr3:21616706
3845480 Lomi Lomi2g04224 Lomi-Chr2:47717060 Lomi4g01189 Lomi-Chr4:19391200