AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04225 ATGGAATCCCTTTCTTCATCAACCTATATCTACAAAACCCTAATAACCCACATCATTTTCTTGATTCTTAGTTGTACCCACAGTCTAAAGGTACAAGCTTTTAAATCACTAATAAACCCACAAGACATACTCCCACTTTTACCCAGACAAATTTCATGGCCTATTTTGAATTCACTCCGAGGTGCTGCTGATCTTCTTCCGAGCTTCGTTGGTGCAGCTTCGATTGCGAATAATTCGGAATTACATTGGAAAGGTTCTTGCTTTTATGAGAATACTGCTTGGTTAGAACTTCATAATAAAAGTGGTAGTGAATTTGGTGGTGGCACTCTTAATGTTAAGGTAAGCAATGCACACAGTTGGACATGTATGGATATCTATGTATTTGCTACTCCATATCGTGTGACAAGGGACTATTATTTTACATCGCGTTCACATACACTCGAGTTCGATGAGTGGTCAGGGAAAGACGAGTATGAATATGTTAAACGTAAGGGCATTTCTATTTTCCTCATGGAAGCAGGGATGATAGGAACCCTAGAAGCACTATGGGAGGTCTTCCCACTGTTCACAAATACTGGATGGGGCGAGAGTTCTAATCTTGCGTTTCTTAAGAAACATATGGGAGCTAACTTTGAAGAACGTACAGGGCCATCGGTTACAAACATTACTGAAGATGATATACACTCGGGAGACTTCCTTGCAATATCAAAAATTCGTGGTAGATGGGGCGGATTTGAAACTCTAGAGAAATGGGTATCCGGAGCATATGCAGGTCATTCGGCCGTTTGCTTGAGGGACCCGGAAGGAAAATTATGGGTTGGAGAATCTGGACATGAAGATGAAGAGGGTCAAGATGTTATTGTTTTGTTGCCATGGGATGAATGGTGGAACTTTGAGTTGACCGAAGATGACGCTAATCCTCATATTGCGTTACTTCCATTGCATCCTGACCTTCAGTCTAAGTTTAACGAGACTGCTGCATGGGAGTATGCACAAAGCATGATAGGGTTGCCGTACGGTTATCATAATTTGATATTTGCCTGGATAGACACTGTCAACGATAATTACCCACCACCTTTGGATGCTAATTTGGTTGCTTCTGTTATGACTGTGTGGAACCATCTCCAGCCTGCATATGCAGCTAACATGTGGAATGAAGCATTGAATAAGCGACTTGGCACAGAGGGGCTTGACCTTCCTGATATATTAGTCGAAGTTGAAAGACGTGGTTCATCATTTGCTGAATTACTTACTATACGGGAACAGGATGACTGGGTATACGCTGACGGAAAGTCAACTTCTTGTGTGGCTTTCGTTCTTGAAATGTACAAAGAAGCAGGACTCTTTGGAGATCTTTCAGACAAAATTCAAGTTACCGAGTTCACAATAAAGGATGCTTACACGCTCAATTTTTATGAAAACAATGCGAGTCGCTTGCCAAAGTGGTGTAACGAGGGGGACACGGTTGACCTTCCATTTTGTCAGATCAAAGGAAAGTATCGAATGGAACTACCTGGATACAATACTATTGAACCATACCCTCATATGACTGAAAGCTGCCCGTCTCTGCCCCCAGACTATTCAAGACCTGAGTACTGCTGA 1602 42.13 MESLSSSTYIYKTLITHIIFLILSCTHSLKVQAFKSLINPQDILPLLPRQISWPILNSLRGAADLLPSFVGAASIANNSELHWKGSCFYENTAWLELHNKSGSEFGGGTLNVKVSNAHSWTCMDIYVFATPYRVTRDYYFTSRSHTLEFDEWSGKDEYEYVKRKGISIFLMEAGMIGTLEALWEVFPLFTNTGWGESSNLAFLKKHMGANFEERTGPSVTNITEDDIHSGDFLAISKIRGRWGGFETLEKWVSGAYAGHSAVCLRDPEGKLWVGESGHEDEEGQDVIVLLPWDEWWNFELTEDDANPHIALLPLHPDLQSKFNETAAWEYAQSMIGLPYGYHNLIFAWIDTVNDNYPPPLDANLVASVMTVWNHLQPAYAANMWNEALNKRLGTEGLDLPDILVEVERRGSSFAELLTIREQDDWVYADGKSTSCVAFVLEMYKEAGLFGDLSDKIQVTEFTIKDAYTLNFYENNASRLPKWCNEGDTVDLPFCQIKGKYRMELPGYNTIEPYPHMTESCPSLPPDYSRPEYC 533
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04225 533 Gene3D endopeptidase domain like (from Nostoc punctiforme) 226 389 - -
Lomi2g04225 533 PANTHER OS01G0793500 PROTEIN 10 533 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04225 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
122856 Lomi2g04225 Lomi7g00261
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3827785 Lomi Lomi2g04225 Lomi-Chr2:47718495 Lomi8g02504 Lomi-Chr8:34964405
3888075 Lomi Lomi2g04225 Lomi-Chr2:47718495 Lomi7g00261 Lomi-Chr7:2550407