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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi2g04226	ATGAGACGAAGACCAGGAATCGGTGGCTTACATGCTGCCGCTGCTGCTAGGGATCAATATCGATTACTAGGAGAAAATGTAGCAAAATTAAGAACAGATCTTATGAAAGAACAGCTTTCCACTTTTCGTTCTCAATTAGAAGACTTTGCTCGCAAACACAAGAATGATATACGTAAGAATCCTGCATTCAGATCACAGTTTCACGAAATGTGTGCGAAAGTAGGCGTAGATCCGTTAGCCTCGAATAAAGGTTTTTGGGCTGAGCTGTTAGGGATTGGTGATTTTTACTATGAACTTGGGGTGCAAATTGTTGATATCTGTTTGGCTACTAGACCTCATAATGGCGGTTTGATTAATTTGGAGGAACTCTGCAAGATACTAAGTCAGAGACGAAAAGGTGCTCGTGAGGCAGTAACTGAAGATGATTGCTTGCGGGCAATTAGTAAACTGAAGGTGTTAGGGAGTGGTTTTGAAGTGATTACTGTTGGGAAAAGAAAGCTTGTGCGTTCTGTCCCGACTGAATTGAAGAAAGATCACAATGATATTTTAGAGTTGTCCCAGGCTCAAGGGTTTGTGACAGTTGAAGAAGTAGAGAGACGTCTATCATGGTCTACTGGCCGTGCCACTGATGCTCTTGAAACTTTATTAGATGAGGGGCTTGCAATGATTGATGATGGCCACAGAGATGGAAAACGACGTTATTGGTTCCCTTGTGTGTCTTCTGTATCTTCCTTCGTGGCATCTGAGACTTCTTAG	756	42.46	MRRRPGIGGLHAAAAARDQYRLLGENVAKLRTDLMKEQLSTFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINLEELCKILSQRRKGAREAVTEDDCLRAISKLKVLGSGFEVITVGKRKLVRSVPTELKKDHNDILELSQAQGFVTVEEVERRLSWSTGRATDALETLLDEGLAMIDDGHRDGKRRYWFPCVSSVSSFVASETS	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi2g04226	251	Gene3D	-	172	251	IPR036388	-
	Lomi2g04226	251	SUPERFAMILY	Winged helix DNA-binding domain	175	239	IPR036390	-
	Lomi2g04226	251	FunFam	Vacuolar-sorting protein SNF8	91	171	-	-
	Lomi2g04226	251	Gene3D	-	24	85	-	-
	Lomi2g04226	251	FunFam	Vacuolar protein sorting-associated protein	172	250	-	-
	Lomi2g04226	251	Coils	Coil	117	137	-	-
	Lomi2g04226	251	Pfam	EAP30-Vps36 family	6	225	IPR040608	-
	Lomi2g04226	251	SUPERFAMILY	Winged helix DNA-binding domain	24	174	IPR036390	-
	Lomi2g04226	251	PANTHER	EAP30 SUBUNIT OF ELL COMPLEX	1	244	IPR016689	GO:0000814(InterPro)\|GO:0000814(PANTHER)\|GO:0043328(PANTHER)\|GO:0071985(InterPro)
	Lomi2g04226	251	Gene3D	-	91	171	IPR036388	-
	Lomi2g04226	251	PIRSF	ESCRT2-Vps22	1	245	IPR016689	GO:0000814(InterPro)\|GO:0071985(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi2g04226	K12188	ESCRT-II complex subunit VPS22

Event-related genes

Select	Gene_1	Gene_2	Event_name
	324149	Lomi2g04226	Lomi1g00425
	333328	Lomi1g00425	Lomi2g04226

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	3854301	Lomi	Lomi1g00425	Lomi-Chr1:3835021	Lomi2g04226	Lomi-Chr2:47726894