AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04228 ATGATAAAATGGATAAAGGAGCTGCGAATCGCATTTGGTGCTCCTTTTCTTTGGCTCGTCTGTTTGATTTACTTCACACAGGGTTTTAGATCTTTTGTATGGACAGCAATTTCCTACCAGCTGAAAGAAAGATTAAAGCTATCGCCTTCATCTTCTCAATTCATAACATCAAGATCATTTTTTCCATGGAGCATAAAACCTGTATACGGAATAATATCAGATTGTATCCCAGTCAAAGGAAGGAAAAGAATTCCTTATTTAGTCATTGCGACACTGCTTTCGCTATTTCCATGGGTGATTCTTGGTCTTGACGAATTTATTAGAAGTTCAAAACGTCATCTCATGATCTTCTTATTTTTGCAAAATCTCGGCTCTGCAATGGCAGATGTTGTAATTGATGCGATGATTGCAGAGGCCGCTAGGCATGAGAAGGCTAAATTCGCTAGCGACCTGCAGTCAGTATCATGGATGACGATGGCTCTTGGGGGAATCTGTGGGAGTTTGTTTGGCGGATATGCATTATATAACTTTCAAATGGGAAACATATTTTTGCTTATCTCCTTTTTGCCAAGTGTGCAACTATTTTCCTGTGGTTTTGTGACTGAGAGTCCTGTTGGGAGTTCTCAATTGCCTGAATTTTCCACATCTAATGACTCTGACATAGATAATAAAAGTGTACCACATGAAGACAGAAAATCAACGGAATCGCCTAAACCTGGTACTTTGATGAGAAAGAGGAGCCATAAAAGTAGCAAGAAAACAATTTCTGATATAATTAAATATCAGATGCCTGAAAACGAATCTTTGCCATCACAATGGTTTCGATCTTTGAAAATGGCTGGTTATACTTTGTTCAAAGCTTTTGGACGGCCCATTATCTTGAGACCAATGGCTTGGTTTTTCCTATCTCAGGTGACCATTCCAAACCTCTCAACAGTTATGTTCTACTACCAGACAGAAGTTCTAAATCTAGAAGCTTCTTTTCTGGGCACAGCACGCGTTATTGGGTGGATGGGCCTCATGCTTGGAACTTTCACTTACAACCGCTACTTAAAGAAGATGAAGTTAAGAAAGATTCTCATGTTCGCTCATGTTACTCTGTCAATATTAACTCTTCTAGACGCAGTATTGGTTTCTAGACTAAATGTGCTGTTTGGCATATCGGATGAATTAATGGTGTTGTTTGGGTCTGCCCTCTCGGATGCAGTTAATCAATTCAAGTTCATGCCATTTCTAATCCTATCAGGACAACTCTGCCCACCTGGAATAGAAGGGACTCTATTTGCGCTCTTCATGTCCATAAACAACTTTGGTTCCACAATGAGTTCATTTGTTGGTGCTGGTTTGGCTTCGGTTCTAGACATCTCTTCGGGTTCTTTTGATAATCTTTGTTTTGGGATCGGCATTCAAGTCATTTGCACATTTATACCAGTTGCTTTCCTGTTTTTGATCCCAAAGGATGCAACAGGGATATTGACATGA 1482 39.74 MIKWIKELRIAFGAPFLWLVCLIYFTQGFRSFVWTAISYQLKERLKLSPSSSQFITSRSFFPWSIKPVYGIISDCIPVKGRKRIPYLVIATLLSLFPWVILGLDEFIRSSKRHLMIFLFLQNLGSAMADVVIDAMIAEAARHEKAKFASDLQSVSWMTMALGGICGSLFGGYALYNFQMGNIFLLISFLPSVQLFSCGFVTESPVGSSQLPEFSTSNDSDIDNKSVPHEDRKSTESPKPGTLMRKRSHKSSKKTISDIIKYQMPENESLPSQWFRSLKMAGYTLFKAFGRPIILRPMAWFFLSQVTIPNLSTVMFYYQTEVLNLEASFLGTARVIGWMGLMLGTFTYNRYLKKMKLRKILMFAHVTLSILTLLDAVLVSRLNVLFGISDELMVLFGSALSDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSINNFGSTMSSFVGAGLASVLDISSGSFDNLCFGIGIQVICTFIPVAFLFLIPKDATGILT 493
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04228 493 SUPERFAMILY MFS general substrate transporter 17 485 IPR036259 -
Lomi2g04228 493 NCBIfam folate-biopterin family MFS transporter 19 486 IPR004324 GO:0016020(InterPro)
Lomi2g04228 493 CDD MFS-FBT 18 482 - -
Lomi2g04228 493 MobiDBLite consensus disorder prediction 222 242 - -
Lomi2g04228 493 Pfam BT1 family 27 486 IPR039309 -
Lomi2g04228 493 MobiDBLite consensus disorder prediction 205 253 - -
Lomi2g04228 493 MobiDBLite consensus disorder prediction 205 221 - -
Lomi2g04228 493 Gene3D MFS general substrate transporter like domains 15 484 IPR036259 -
Lomi2g04228 493 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 5 488 IPR039309 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04228 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
324148 Lomi2g04228 Lomi1g00424
333329 Lomi1g00424 Lomi2g04228
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3827786 Lomi Lomi2g04228 Lomi-Chr2:47731721 Lomi5g02520 Lomi-Chr5:34793165
3845792 Lomi Lomi3g02410 Lomi-Chr3:22905634 Lomi2g04228 Lomi-Chr2:47731721
3854300 Lomi Lomi1g00424 Lomi-Chr1:3829395 Lomi2g04228 Lomi-Chr2:47731721