Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04228 | ATGATAAAATGGATAAAGGAGCTGCGAATCGCATTTGGTGCTCCTTTTCTTTGGCTCGTCTGTTTGATTTACTTCACACAGGGTTTTAGATCTTTTGTATGGACAGCAATTTCCTACCAGCTGAAAGAAAGATTAAAGCTATCGCCTTCATCTTCTCAATTCATAACATCAAGATCATTTTTTCCATGGAGCATAAAACCTGTATACGGAATAATATCAGATTGTATCCCAGTCAAAGGAAGGAAAAGAATTCCTTATTTAGTCATTGCGACACTGCTTTCGCTATTTCCATGGGTGATTCTTGGTCTTGACGAATTTATTAGAAGTTCAAAACGTCATCTCATGATCTTCTTATTTTTGCAAAATCTCGGCTCTGCAATGGCAGATGTTGTAATTGATGCGATGATTGCAGAGGCCGCTAGGCATGAGAAGGCTAAATTCGCTAGCGACCTGCAGTCAGTATCATGGATGACGATGGCTCTTGGGGGAATCTGTGGGAGTTTGTTTGGCGGATATGCATTATATAACTTTCAAATGGGAAACATATTTTTGCTTATCTCCTTTTTGCCAAGTGTGCAACTATTTTCCTGTGGTTTTGTGACTGAGAGTCCTGTTGGGAGTTCTCAATTGCCTGAATTTTCCACATCTAATGACTCTGACATAGATAATAAAAGTGTACCACATGAAGACAGAAAATCAACGGAATCGCCTAAACCTGGTACTTTGATGAGAAAGAGGAGCCATAAAAGTAGCAAGAAAACAATTTCTGATATAATTAAATATCAGATGCCTGAAAACGAATCTTTGCCATCACAATGGTTTCGATCTTTGAAAATGGCTGGTTATACTTTGTTCAAAGCTTTTGGACGGCCCATTATCTTGAGACCAATGGCTTGGTTTTTCCTATCTCAGGTGACCATTCCAAACCTCTCAACAGTTATGTTCTACTACCAGACAGAAGTTCTAAATCTAGAAGCTTCTTTTCTGGGCACAGCACGCGTTATTGGGTGGATGGGCCTCATGCTTGGAACTTTCACTTACAACCGCTACTTAAAGAAGATGAAGTTAAGAAAGATTCTCATGTTCGCTCATGTTACTCTGTCAATATTAACTCTTCTAGACGCAGTATTGGTTTCTAGACTAAATGTGCTGTTTGGCATATCGGATGAATTAATGGTGTTGTTTGGGTCTGCCCTCTCGGATGCAGTTAATCAATTCAAGTTCATGCCATTTCTAATCCTATCAGGACAACTCTGCCCACCTGGAATAGAAGGGACTCTATTTGCGCTCTTCATGTCCATAAACAACTTTGGTTCCACAATGAGTTCATTTGTTGGTGCTGGTTTGGCTTCGGTTCTAGACATCTCTTCGGGTTCTTTTGATAATCTTTGTTTTGGGATCGGCATTCAAGTCATTTGCACATTTATACCAGTTGCTTTCCTGTTTTTGATCCCAAAGGATGCAACAGGGATATTGACATGA | 1482 | 39.74 | MIKWIKELRIAFGAPFLWLVCLIYFTQGFRSFVWTAISYQLKERLKLSPSSSQFITSRSFFPWSIKPVYGIISDCIPVKGRKRIPYLVIATLLSLFPWVILGLDEFIRSSKRHLMIFLFLQNLGSAMADVVIDAMIAEAARHEKAKFASDLQSVSWMTMALGGICGSLFGGYALYNFQMGNIFLLISFLPSVQLFSCGFVTESPVGSSQLPEFSTSNDSDIDNKSVPHEDRKSTESPKPGTLMRKRSHKSSKKTISDIIKYQMPENESLPSQWFRSLKMAGYTLFKAFGRPIILRPMAWFFLSQVTIPNLSTVMFYYQTEVLNLEASFLGTARVIGWMGLMLGTFTYNRYLKKMKLRKILMFAHVTLSILTLLDAVLVSRLNVLFGISDELMVLFGSALSDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSINNFGSTMSSFVGAGLASVLDISSGSFDNLCFGIGIQVICTFIPVAFLFLIPKDATGILT | 493 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04228 | 493 | SUPERFAMILY | MFS general substrate transporter | 17 | 485 | IPR036259 | - | |
| Lomi2g04228 | 493 | NCBIfam | folate-biopterin family MFS transporter | 19 | 486 | IPR004324 | GO:0016020(InterPro) | |
| Lomi2g04228 | 493 | CDD | MFS-FBT | 18 | 482 | - | - | |
| Lomi2g04228 | 493 | MobiDBLite | consensus disorder prediction | 222 | 242 | - | - | |
| Lomi2g04228 | 493 | Pfam | BT1 family | 27 | 486 | IPR039309 | - | |
| Lomi2g04228 | 493 | MobiDBLite | consensus disorder prediction | 205 | 253 | - | - | |
| Lomi2g04228 | 493 | MobiDBLite | consensus disorder prediction | 205 | 221 | - | - | |
| Lomi2g04228 | 493 | Gene3D | MFS general substrate transporter like domains | 15 | 484 | IPR036259 | - | |
| Lomi2g04228 | 493 | PANTHER | FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC | 5 | 488 | IPR039309 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04228 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 324148 | Lomi2g04228 | Lomi1g00424 | |
| 333329 | Lomi1g00424 | Lomi2g04228 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 3827786 | Lomi | Lomi2g04228 | Lomi-Chr2:47731721 | Lomi5g02520 | Lomi-Chr5:34793165 | |
| 3845792 | Lomi | Lomi3g02410 | Lomi-Chr3:22905634 | Lomi2g04228 | Lomi-Chr2:47731721 | |
| 3854300 | Lomi | Lomi1g00424 | Lomi-Chr1:3829395 | Lomi2g04228 | Lomi-Chr2:47731721 |