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Gene ID

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi2g04232	ATGGCTGCTGCTTTTTCATCCACATTCCCAGCCCCAAATTCATCTTATTCTTCTTCACCATTTCTAAAACACTTCCTTTCTTCACAATCACCCCTTCTTCAATTCAAGAAAACCGGACCCAAACCCTTTACCGTTTCTTGTGTTATTGCTAAACCGTCATCGGTTCAAATGGGATCGGTTCATGATGAATCGTCGGTCCTTCAACGACCGGATTCGCTCGGCCGGTTTGGTAAGTATGGTGGGAAGTATGTACCTGAAACCCTAATGTATGCTCTTACAGAACTTGAATCTGCTTTTAAAGCCCTTGCTACTGACCATGAATTCCAGAAGGAATTAGATGGGATATTGAAGGATTATGTTGGTAGGGAAAGCCCTCTTTATTTTGCTGAACGACTTACAGAGCACTATAAACGTCCTAATGGTGAAGGGCCCGAAATATATCTTAAGAGAGAAGATCTTAACCATACTGGTGCACATAAGATCAATAACGCGGTTGCACAAGCTTTGCTAGCCAAGAAGTTAGGGAAAGAGAGAATCATTGCAGAAACTGGTGCTGGGCAGCATGGAGTTGCAACTGCCACTGTATGTGCACGATTTGGGTTGAAATGTATTATTTATATGGGTGCTCAAGATATGGAAAGACAAGCTCTTAATGTGTTCAGAATGAAGCTCCTTGGAGCAGAGGTTAGAGCAGTTCATTCAGGGACAGCCACACTAAAGGATGCTACATCAGAGGCCATAAGGGACTGGGTGACCAATGTGGAAACAACTCACTACATTTTGGGTTCTGTTGCGGGCCCACACCCTTACCCCATGATGGTACGGGAGTTCCATGCTGTAATTGGTAAAGAAACAAGAAAGCAAGCATTGGAAAAATGGGGAGGAAAACCAGATGTGTTGGTTGCTTGTGTTGGTGGAGGCTCAAATGCTATGGGACTTTTTCATGAGTTTGTTGATGACAAACAAGTTAGATTGATCGGAGTTGAGGCTGCGGGTTTTGGTCTAGACAGCGGAAAACATGCAGCAACGTTAACAAAAGGAGAAGTTGGTGTGTTGCATGGAGCCATGAGCTATTTGTTGCAGGATGATGATGGTCAAATTATTGAGCCTCACTCCATTAGTGCTGGGCTGGACTACCCAGGAGTTGGACCCGAGCACAGCTTTCTGAAAGATTTAGGCCGGGCTGAATATTATAGCATTACTGACGAGGAAGCATTGGAAGCTTTTAAGAGACTGTCGAGATTAGAGGGCATAATTCCAGCTCTGGAAACATCTCATGCACTCGCTTATCTGGAGAAGCTATGCCCGACACTACCTAATGGCACCAAGGTTGTGCTTAACTGCAGTGGTAGAGGAGACAAAGATGTTCATACTGCTATCAAGTATTTGCAGGTTTAA	1398	44.28	MAAAFSSTFPAPNSSYSSSPFLKHFLSSQSPLLQFKKTGPKPFTVSCVIAKPSSVQMGSVHDESSVLQRPDSLGRFGKYGGKYVPETLMYALTELESAFKALATDHEFQKELDGILKDYVGRESPLYFAERLTEHYKRPNGEGPEIYLKREDLNHTGAHKINNAVAQALLAKKLGKERIIAETGAGQHGVATATVCARFGLKCIIYMGAQDMERQALNVFRMKLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKQVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDLGRAEYYSITDEEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKYLQV	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi2g04232	465	SUPERFAMILY	Tryptophan synthase beta subunit-like PLP-dependent enzymes	70	463	IPR036052	-
	Lomi2g04232	465	Pfam	Pyridoxal-phosphate dependent enzyme	122	450	IPR001926	-
	Lomi2g04232	465	PIRSF	Trp-syn-beta	60	465	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Lomi2g04232	465	Hamap	Tryptophan synthase beta chain [trpB].	69	463	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Lomi2g04232	465	FunFam	Tryptophan synthase beta chain	277	456	-	-
	Lomi2g04232	465	NCBIfam	tryptophan synthase subunit beta	74	462	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Lomi2g04232	465	FunFam	Tryptophan synthase beta chain	122	276	-	-
	Lomi2g04232	465	Gene3D	-	76	278	IPR036052	-
	Lomi2g04232	465	Gene3D	-	121	456	IPR036052	-
	Lomi2g04232	465	CDD	Trp-synth-B	91	458	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Lomi2g04232	465	PANTHER	TRYPTOPHAN SYNTHASE-RELATED	60	464	IPR023026	GO:0000162(PANTHER)\|GO:0000162(InterPro)\|GO:0004834(PANTHER)\|GO:0004834(InterPro)\|GO:0005737(PANTHER)\|GO:0009570(PANTHER)
	Lomi2g04232	465	ProSitePatterns	Tryptophan synthase beta chain pyridoxal-phosphate attachment site.	153	167	IPR006653	GO:0004834(InterPro)\|GO:0006568(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi2g04232	K01696	tryptophan synthase beta chain [EC:4.2.1.20]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	118679	Lomi11g01873	Lomi2g04232
	122857	Lomi2g04232	Lomi5g01987
	324147	Lomi2g04232	Lomi1g00423
	333330	Lomi1g00423	Lomi2g04232

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	3816075	Lomi	Lomi11g01874	Lomi-Chr11:27134997	Lomi2g04232	Lomi-Chr2:47751768
	3854299	Lomi	Lomi1g00423	Lomi-Chr1:3818799	Lomi2g04232	Lomi-Chr2:47751768
	3867177	Lomi	Lomi11g01873	Lomi-Chr11:27132982	Lomi2g04232	Lomi-Chr2:47751768
	3884934	Lomi	Lomi2g01856	Lomi-Chr2:17190437	Lomi2g04232	Lomi-Chr2:47751768
	3886602	Lomi	Lomi2g04232	Lomi-Chr2:47751768	Lomi5g01987	Lomi-Chr5:30960223