AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04262 ATGGGCCCAGAACAATTTTATGGTTACAGATTGAGTGGTCAAGGGTTACCTTACTCCCCTTCTTACCCTCAAAAGCCTGTGGTTCCTACACAACTGATAGAATCTCTGAAGCTCGAGGCACGAGACTCCCCCAACTGTCCCTTTGTAAGCCCGCTTGATTCAGAGACATTCACTACATTGAGCTCAGGTGCTAGTCCTTCTTCCCTGGAAGATTGTAGCTCGTTTAACCAATCAAGCTCATCTACTTTTGTGCAAAGTAGCGGTATTCAGTATATGAAAAATGCTCTTCAGGATATAGAGACGACTCTAATGGCTCCAGATGAGGAAGTATCCACACCCGTGAACCCTCCATCCGGTCAAACCAGGTGGCCACAGCAGTTGACCCATGAACCCACTGGTTCAAAGTTGGTCCCCCAGGCTGTATATGGTCCAAGATACAGTCTATCCGGGAATACCAATAATAATAACAATCTAAAGCAGTTGCTTATTGCATGTGGAAGCGCTTTAGCTGGGAACAAGATTAACGAGTTTGAGGTATTAGTTGAACACGCACGGGCTGCCGTGTCTATTAGTGGCGACCCAATTCAGAGGCTAGGAGCATATATGGTGGAGGGATTGGTGGCTAGGCGAGAGTTATCCGGGAATAATATATATCGAGTCCTAAGGTGTCGGGAACCTGAGGGGAAAGACTTACTTTCTTACATGCATATTTTATATGAAATGTGCCCTTACTTGAAATTCGGCTACATGGCTGCAAATGGTGCTATAGCTGAGGCTTGTAGAAATGAAGACCGAATCCACATCATAGACTTCCAAATAGCTCAAGGGACTCAATGGATGACTCTTCTACAAGCACTTGCGGCTCGACCAGGCGGGCCACCTCATGTTCGTATCACCGGAATCGATGATCCTGTCTCGAAGTACGCCCGCGGAGATTGCTTAGAGGTAGTGGGAAAACGTTTGGAGGCAGTTTCACAAAAATTCAACATTCCAATCGAGTTTCATCCACTTCCAGTTTATGCCCCGTTTATAACTAAAGAGATGCTTGATGTTAGACCTGGTGAAGCCCTGGCGGTTAACTTTCCGTTTCAACTACACCACATGCCTGATGAAAGCGTTGATGTGAATAACCCGAGAGATGAGCGATTAAGAATGGTGAAGTCACTTTCACCCAAAGTGGTTACTCTGGTTGAGCAAGAATCAAACACAAATACAGCCGCTTTCTTTTCAAGATTTGTGGAAGTGCTTGACTACTACTCTGCAATGTTTGAGTCAATGGATGCAACTTTAGCACGGGATAGAAAAGACAGGATAAATGTCGAACAACACTGTCTGGCTCGAGACATAGTCAACATCATAGCTTGTGAAGGTAAGGAGAGAGTAGAAAGACATGAGCTTCTTGGGAAGTGGCGATCTAGGTTAACAATGGCAGGTTTCAAACAGTATCCACTGAGTTCGTATGTGAATTCGGTTATCAAAAACTTGCTAAAGTGTTACTCGGAGCATTATACGTTGTTCGAGAAAGATGGAGCTATGCTGTTGGGATGGAAAGATAGGAATCTTGTATCAGCATCTGCTTGGCACTGA 1587 44.93 MGPEQFYGYRLSGQGLPYSPSYPQKPVVPTQLIESLKLEARDSPNCPFVSPLDSETFTTLSSGASPSSLEDCSSFNQSSSSTFVQSSGIQYMKNALQDIETTLMAPDEEVSTPVNPPSGQTRWPQQLTHEPTGSKLVPQAVYGPRYSLSGNTNNNNNLKQLLIACGSALAGNKINEFEVLVEHARAAVSISGDPIQRLGAYMVEGLVARRELSGNNIYRVLRCREPEGKDLLSYMHILYEMCPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGPPHVRITGIDDPVSKYARGDCLEVVGKRLEAVSQKFNIPIEFHPLPVYAPFITKEMLDVRPGEALAVNFPFQLHHMPDESVDVNNPRDERLRMVKSLSPKVVTLVEQESNTNTAAFFSRFVEVLDYYSAMFESMDATLARDRKDRINVEQHCLARDIVNIIACEGKERVERHELLGKWRSRLTMAGFKQYPLSSYVNSVIKNLLKCYSEHYTLFEKDGAMLLGWKDRNLVSASAWH 528
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04262 528 ProSiteProfiles GRAS family profile. 149 528 IPR005202 -
Lomi2g04262 528 Pfam GRAS domain family 158 527 IPR005202 -
Lomi2g04262 528 MobiDBLite consensus disorder prediction 108 130 - -
Lomi2g04262 528 MobiDBLite consensus disorder prediction 113 130 - -
Lomi2g04262 528 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 130 527 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04262 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3827802 Lomi Lomi2g04262 Lomi-Chr2:47998936 Lomi6g00309 Lomi-Chr6:3369521
3854283 Lomi Lomi1g00400 Lomi-Chr1:3618276 Lomi2g04262 Lomi-Chr2:47998936
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00400 . 69 489 GRAS Transcription Factor family AT5G48150 57.303 7.49e-175 501.0
Lomi1g00532 . 175 596 GRAS Transcription Factor family AT1G50600 55.425 8.56e-158 459.0
Lomi1g01548 . 86 766 GRAS Transcription Factor family AT1G07530 47.965 0.0 607.0
Lomi1g01895 ACH,LST 87 555 GRAS Transcription Factor family AT4G00150 48.754 8.35e-154 454.0
Lomi1g03315 LST 170 547 GRAS Transcription Factor family AT3G03450 29.306 1.43e-56 196.0
Lomi1g03317 LST 215 582 GRAS Transcription Factor family AT2G01570 26.031 4.20e-51 181.0
Lomi1g03359 LST 186 555 GRAS Transcription Factor family AT4G00150 47.493 5.35e-103 323.0
Lomi1g03430 . 1 654 GRAS Transcription Factor family AT1G63100 50.815 0.0 561.0
Lomi2g00958 . 1 654 GRAS Transcription Factor family AT1G63100 51.699 0.0 572.0
Lomi2g01052 LST 205 555 GRAS Transcription Factor family AT4G00150 48.056 8.36e-104 325.0
Lomi2g01093 LST 130 547 GRAS Transcription Factor family AT3G03450 28.217 4.39e-56 194.0
Lomi2g01094 LST 170 547 GRAS Transcription Factor family AT3G03450 29.82 9.94e-58 200.0
Lomi2g02436 LST 84 555 GRAS Transcription Factor family AT4G00150 49.468 5.60e-157 462.0
Lomi2g02773 . 86 767 GRAS Transcription Factor family AT1G07530 48.336 0.0 622.0
Lomi2g03091 . 44 714 GRAS Transcription Factor family AT2G37650 53.12 0.0 662.0
Lomi2g03454 ACH 207 584 GRAS Transcription Factor family AT5G66770 27.204 5.15e-23 100.0
Lomi2g03455 ACH 242 584 GRAS Transcription Factor family AT5G66770 27.809 1.27e-21 96.3
Lomi2g04185 . 163 545 GRAS Transcription Factor family AT3G03450 34.414 1.60e-65 220.0
Lomi2g04262 . 42 489 GRAS Transcription Factor family AT5G48150 55.579 4.49e-178 508.0
Lomi2g04435 . 40 490 GRAS Transcription Factor family AT5G48150 60.613 0.0 562.0
Lomi3g00169 . 27 529 GRAS Transcription Factor family AT1G14920 48.538 7.83e-161 466.0
Lomi3g00539 ACH 1 510 GRAS Transcription Factor family AT3G13840 47.17 2.91e-148 434.0
Lomi3g00786 . 34 490 GRAS Transcription Factor family AT5G48150 65.584 0.0 610.0
Lomi3g01252 . 2 409 GRAS Transcription Factor family AT3G49950 43.972 3.89e-118 349.0
Lomi3g01470 . 186 555 GRAS Transcription Factor family AT4G00150 56.771 6.43e-139 417.0
Lomi3g01907 . 26 582 GRAS Transcription Factor family AT2G01570 62.281 0.0 675.0
Lomi3g02532 LST 154 518 GRAS Transcription Factor family AT5G17490 34.414 3.39e-54 187.0
Lomi3g02552 . 18 592 GRAS Transcription Factor family AT1G21450 52.811 0.0 582.0
Lomi3g02714 . 62 581 GRAS Transcription Factor family AT3G46600 43.021 3.68e-147 431.0
Lomi3g02734 . 62 581 GRAS Transcription Factor family AT3G46600 43.021 3.68e-147 431.0
Lomi3g02735 . 20 766 GRAS Transcription Factor family AT1G07530 47.059 0.0 624.0
Lomi3g02748 . 317 767 GRAS Transcription Factor family AT1G07530 51.106 1.11e-165 489.0
Lomi4g00072 . 210 479 GRAS Transcription Factor family AT5G66770 25.267 2.14e-15 77.0
Lomi4g00073 ACH 148 515 GRAS Transcription Factor family AT5G17490 23.393 6.26e-20 90.5
Lomi4g00787 . 20 766 GRAS Transcription Factor family AT1G07530 46.728 0.0 616.0
Lomi4g00788 . 300 764 GRAS Transcription Factor family AT1G07530 50.106 1.33e-162 482.0
Lomi4g00789 . 316 767 GRAS Transcription Factor family AT1G07530 51.435 6.19e-166 490.0
Lomi4g00840 LST 144 516 GRAS Transcription Factor family AT5G17490 33.573 7.20e-51 179.0
Lomi4g00933 . 18 592 GRAS Transcription Factor family AT1G21450 53.754 0.0 586.0
Lomi4g01597 . 14 530 GRAS Transcription Factor family AT1G14920 62.591 0.0 673.0
Lomi4g02518 . 135 507 GRAS Transcription Factor family AT1G66350 29.082 1.88e-58 201.0
Lomi4g02582 . 34 490 GRAS Transcription Factor family AT5G48150 63.636 0.0 595.0
Lomi5g01887 . 40 444 GRAS Transcription Factor family AT1G55580 51.463 1.99e-126 372.0
Lomi6g00309 . 63 490 GRAS Transcription Factor family AT5G48150 69.037 0.0 624.0
Lomi6g00872 . 12 409 GRAS Transcription Factor family AT3G49950 61.017 0.0 514.0
Lomi6g00881 LST 1 530 GRAS Transcription Factor family AT4G37650 54.659 0.0 541.0
Lomi6g00968 ACH 37 485 GRAS Transcription Factor family AT4G36710 47.826 6.38e-131 386.0
Lomi6g00982 . 2 584 GRAS Transcription Factor family AT5G66770 53.704 0.0 536.0
Lomi7g00304 . 63 490 GRAS Transcription Factor family AT5G48150 69.037 0.0 623.0
Lomi7g00874 . 133 530 GRAS Transcription Factor family AT4G37650 65.672 0.0 532.0
Lomi7g00875 LST 1 530 GRAS Transcription Factor family AT4G37650 56.912 0.0 550.0
Lomi8g00063 ACH,LST 30 639 GRAS Transcription Factor family AT5G52510 39.626 3.40e-123 376.0
Lomi8g02550 LST 35 405 GRAS Transcription Factor family AT5G41920 67.105 0.0 512.0
Lomi9g00056 ACH,LST 9 510 GRAS Transcription Factor family AT3G13840 46.857 5.11e-154 449.0
Lomi9g00786 . 172 545 GRAS Transcription Factor family AT3G03450 44.094 2.03e-98 311.0
Lomi9g01590 . 49 515 GRAS Transcription Factor family AT5G17490 31.474 1.93e-57 197.0
Lomi10g00066 ACH,LST 30 639 GRAS Transcription Factor family AT5G52510 39.506 1.41e-119 367.0
Lomi10g00290 . 86 767 GRAS Transcription Factor family AT1G07530 45.007 0.0 560.0
Lomi10g01111 ACH 37 486 GRAS Transcription Factor family AT4G36710 49.032 7.68e-141 413.0
Lomi10g01299 . 37 581 GRAS Transcription Factor family AT2G01570 61.802 0.0 668.0
Lomi10g02529 . 25 525 GRAS Transcription Factor family AT4G17230 54.492 0.0 530.0
Lomi10g02914 LST 9 405 GRAS Transcription Factor family AT5G41920 63.373 0.0 512.0
Lomi11g00884 . 87 768 GRAS Transcription Factor family AT1G07530 45.887 0.0 571.0
Lomi11g01032 ACH 29 639 GRAS Transcription Factor family AT5G52510 44.64 4.13e-135 406.0
Lomi11g01252 . 141 530 GRAS Transcription Factor family AT4G37650 54.25 3.62e-142 414.0
Lomi12g00835 . 24 478 GRAS Transcription Factor family AT1G50420 38.21 1.78e-104 316.0
Lomi12g01227 . 144 507 GRAS Transcription Factor family AT1G66350 44.327 1.40e-98 311.0
Lomi12g01946 . 154 516 GRAS Transcription Factor family AT5G17490 36.48 1.69e-64 218.0
Lomi12g02217 ACH,LST 9 510 GRAS Transcription Factor family AT3G13840 46.947 1.48e-151 442.0
Lomi13g00285 . 20 767 GRAS Transcription Factor family AT1G07530 48.217 0.0 642.0
Lomi13g00538 LST 250 652 GRAS Transcription Factor family AT3G54220 50.602 1.36e-140 417.0
Lomi13g00725 . 258 651 GRAS Transcription Factor family AT3G54220 82.487 0.0 660.0
Lomi13g01315 LST 4 482 GRAS Transcription Factor family AT1G50420 61.458 0.0 575.0
Lomi14g00049 LST 1 482 GRAS Transcription Factor family AT1G50420 62.112 0.0 589.0
Lomi14g00519 . 91 651 GRAS Transcription Factor family AT3G54220 64.179 0.0 708.0
Lomi14g00711 LST 277 652 GRAS Transcription Factor family AT3G54220 54.354 4.77e-141 418.0
Lomi14g00960 . 20 767 GRAS Transcription Factor family AT1G07530 48.289 0.0 652.0
Lomi14g01219 . 9 713 GRAS Transcription Factor family AT2G37650 50.21 0.0 651.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lomi GRAS 1.1e-127 CL0063 TF GRAS