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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04268 ATGTCAATTATACGGCAAAACAAAAACACACAAAAAACTCTCAAACATGTTTTTCTTCTTCTTATTGTTGTTACATTTTCGCATTCACAATCCGTAACAGGTTCTTCAATTCACGATCTTCTAAAAAGCAAAGGGTTACCAGTTGGTTTGTTTCCAAAAGAAGTTGAATCATTCACTTTGTATGATACAGGTCTTCTAGAAGTTTTCTTAAGGGGCCCATGTTTAACGAAATTCGATACGATGGCGTTTTATGAAAGTACTGTTAGAGCTAATTTAACATATGGTAGTTTAACTGGTGTTGAAGGGCTATCACAAGAAGAATTGTTTTTATGGTTGCCGGTCAAAGATATCATCGTTGACGATCCTAAATCTGGGCTCATTTTGTTTGACATTGGATTAGCTCATAAACAGCTCTCACTTTCATTGTTTGAAGATCCACCTGATTGTAAATCTGAAGGTGCTATGATTTTGAAGAAGAAATCTAGAAAGGAGATCGGATTTGATGCTCAAATGTAG 516 35.27 MSIIRQNKNTQKTLKHVFLLLIVVTFSHSQSVTGSSIHDLLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTVRANLTYGSLTGVEGLSQEELFLWLPVKDIIVDDPKSGLILFDIGLAHKQLSLSLFEDPPDCKSEGAMILKKKSRKEIGFDAQM 171
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04268 171 SUPERFAMILY At5g01610-like 15 151 IPR036758 -
Lomi2g04268 171 PANTHER T31J12.3 PROTEIN-RELATED 27 150 IPR007493 -
Lomi2g04268 171 FunFam Uncharacterized protein At3g07460 24 153 - -
Lomi2g04268 171 Gene3D - 23 154 IPR036758 -
Lomi2g04268 171 Pfam Protein of unknown function, DUF538 37 144 IPR007493 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04268 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
122869 Lomi2g04268 Lomi4g02692
324132 Lomi2g04268 Lomi1g00396
333345 Lomi1g00396 Lomi2g04268
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3827805 Lomi Lomi2g04268 Lomi-Chr2:48049616 Lomi4g00538 Lomi-Chr4:5885711
3854280 Lomi Lomi1g00396 Lomi-Chr1:3594095 Lomi2g04268 Lomi-Chr2:48049616