AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04281 ATGGGCTTGTCTCTAAAACTCGCTTTCGTTTCCACCACCGTCATGTCCACCGCCGTCATGCTAAAGCTTTTAACACCTATCACTACGGATCTCACAACCTCTGATTTTGCTACAATATGGACAGCCTTAATCTCATGGCTCAGACCGCCTTACCTTTACGTTGTCATCAATTGTATCATCATCACTATCGTCGCATCTACGCGCTTACAATCGAAACTTGAAACTTCTCATTTGATATCAACTTTCCCGAACCCGGCTGAACCGGTCAACGTTGTACTTCCTGTTGAACTACCGCATGCACATCATGAACCGGAAATACCATTTCATGAGTATGTTCATGTTCCTGAACCGGTGAAGTTGGTTAAAGTTGCGGAACCGGATTTGGGTATTAATGATGACTTTATTAGTGATGAAAAAAGGGATGAAGAACTAAAGAAAAATAGTAGGGCTGATAAAAAGTCGGTCATATCGATGTCAGCGTCGAAAACGAATGAAGTTGATTTATCTAATTTTTCGATGGACAAACCACCGGCTTCCGCCAGATTCAGCCACCGTAAACCGTCCAAATCCACCAATGAAGGTGGAAGAACGTTGGGTGTTGCAAAACCTAAGAGGCAAGACACGCTGGAAACCACGTGGAAGACAATAACCGAGGGTCGGTCGGTGCCAATAAATCGCCACCTCCGAAAATCCGACACGTTGGAGACCCACGGGAACAGCCGTCAAAATCGCAAAGCCGAAGACTTACCGACCGATCATCATTCCAAAAGAATGACAAAATCCGACACGTTTGATGTCAACCGCGGCAGAGGCAGTGACAGAAAACCACCGCCTCTGCCGTCGAAACTGAACCGCTTTGATGGCTCGGGGAGGTTGAAAAAAGAACCTTCGTTAGGACAAGAGGAATTGAATCGAAGAGTGGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGATTACAAAGACAAGAATCGTTGAATCGATACATGGAGATGATTAACCGTGGGGCCCATTAA 1017 44.94 MGLSLKLAFVSTTVMSTAVMLKLLTPITTDLTTSDFATIWTALISWLRPPYLYVVINCIIITIVASTRLQSKLETSHLISTFPNPAEPVNVVLPVELPHAHHEPEIPFHEYVHVPEPVKLVKVAEPDLGINDDFISDEKRDEELKKNSRADKKSVISMSASKTNEVDLSNFSMDKPPASARFSHRKPSKSTNEGGRTLGVAKPKRQDTLETTWKTITEGRSVPINRHLRKSDTLETHGNSRQNRKAEDLPTDHHSKRMTKSDTFDVNRGRGSDRKPPPLPSKLNRFDGSGRLKKEPSLGQEELNRRVEAFIKKFNEDMRLQRQESLNRYMEMINRGAH 338
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04281 338 Pfam Cotton fibre expressed protein 300 335 IPR008480 -
Lomi2g04281 338 PANTHER COTTON FIBER (DUF761) 29 336 - -
Lomi2g04281 338 MobiDBLite consensus disorder prediction 167 300 - -
Lomi2g04281 338 Pfam Domain of unknown function (DUF4408) 39 69 IPR025520 -
Lomi2g04281 338 MobiDBLite consensus disorder prediction 223 272 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04281 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
324128 Lomi2g04281 Lomi1g00376
333349 Lomi1g00376 Lomi2g04281
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr10:26908677 Lomi2g04281 Lomi-Chr2:48280124 dispersed
Lomi Lomi-Chr2:48280124 Lomi8g02024 Lomi-Chr8:26453239 dispersed
Lomi Lomi-Chr1:3365963 Lomi2g04281 Lomi-Chr2:48280124 wgd
Lomi Lomi-Chr1:36601016 Lomi2g04281 Lomi-Chr2:48280124 wgd
Lomi Lomi-Chr2:17641467 Lomi2g04281 Lomi-Chr2:48280124 wgd