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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04313 ATGGGTCGGGTATTTCTGGTGGAATTAGAAGGAAGGACTTACAAATGCAGATTTTGCAAAACAGATTTAGCTCTTGCTGAAAATGTTGTCTCCCGGGGGTTTCATTGTAGAAGAGGAAAAGCTTACCTGTTTAGCAATGTGGTGAACATCACAGCTGGACCTATTGAAGAGAGGATGATGCTATCTGGATTGCACACCGTTACAGATATATATTGTGTATGCTGTGGACAAATTGTTGGCTGGAAATATGAGACCGCACATGAGCAATCCCAGAAGTATAAAGAAGGCAAATTTGTTCTTGAGAGAGGAAGAATAATTGATGGACTTGATTCAGAATTTTACATAGATACCCGTCCGAGTTCAAGTGATGCTGAAGAAGCCTAA 384 40.62 MGRVFLVELEGRTYKCRFCKTDLALAENVVSRGFHCRRGKAYLFSNVVNITAGPIEERMMLSGLHTVTDIYCVCCGQIVGWKYETAHEQSQKYKEGKFVLERGRIIDGLDSEFYIDTRPSSSDAEEA 127
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04313 127 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 106 IPR039058 -
Lomi2g04313 127 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Lomi2g04313 127 Pfam Yippee zinc-binding-DNA-binding -Mis18, centromere assembly 14 105 IPR004910 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04313 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
324113 Lomi2g04313 Lomi1g00346
333364 Lomi1g00346 Lomi2g04313
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:48536288 Lomi4g00050 Lomi-Chr4:532397 dispersed
Lomi Lomi-Chr1:3044810 Lomi2g04313 Lomi-Chr2:48536288 wgd