Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04345 | ATGGATTCACTTACTCAATCGGCAGTCCCACCAAACAAAAACCGATTAGCTCGAACGTTTACTAAGGTGTTACCTAGTCGAAAAACGAAGCCACGCGAAAAGGCCAAACTCGACAAACCAATCACCGCCGTGGATCCAACTAAGTTCTTCAACGATCAAAATGAGAAGTTGAAAACTAAAGCGTTTATTTCCAAAGTGTTTGCCACCATTTCATCAGTGAAAGCTGCATATGCACAACTGCAATCTGCTCAATCTCCTTATGATGCTGAAGGGATTCAGTCAGCTGATCAGATCATGGTGTCTGAATTAAAAGCATTATCTGAGTTCAAACAGTCGTTCTTGAAGAAACATCTGGACGATAATGCCCCTGGAACCACTCAGCTGTTGGCTGAAATACAAGAACAAAAGAATATGTTACAAATGTATGAAATAACAACGAAAAAGATGGACAGTCAGAAAAAACTCAAAGATTCGGAGATCATTTTCTTGAAAGAGAAGTTGGAAGAGGCCAATAAAGAAAACAAGTCGATCGAAAGAAGGTTAAACTCGAGTGGGCCTTTAGCGTCTCACGAGAAGCTTAATTTCTCGTCTTTAAGTATAAACAATTTTCTCCTTGCTCTTCAACAAACGACGAAATCGATTAAAAGTTTAGTGAAGTTCATGATGAGTGAAATGGAAGCCGTGAATTGGGATTTAGTTGCAGCTGCTAGCTCAATCCAACCAGATTTTGTTCATTGGGACGAATATAATAAATGTTATGCATTCGAGTCATTCTTTGGTCAGGTGATGTTCGATGGTTTCAACAACTCGAGTTTTACGATCATGGATAAGTCCGAGTCATCTCAAGGCCAAGAACGGTTTTTCGACATGTATATGGAGCTAAAATCTTTAAAAGCGAGAGAATACATCATATGGAAACCAAACTCCATGTTTGCGAAATTTTGTTGGTTTAAGTATTTGAAACTCATACACCCGTTATTGGAATACTCTCTTTTCGGTAATTTGAATCAACGGAACCTTGTGGCATCCGAAAACTTCCCAGACACAACTTTTTTCTCGTCGTTTGCTGACATGGCAAAACGCGTTTGGCTCCTACATTGTCTAGCATTCGCATTCAATCCCAACAAGGCATCGGTATTTCAAGTCCGAAAAGGGAGTCGGTTTTCTGAAGTGTATATGGAAAGCGTAAATGAAGAAGAACCTCAGAACACGACGCCACAAGTGGCGTTTACGGTAGTTCCGGGGTTCAAGTTGGGTAAAACAGTTATTCAGTGTCAAGTATATTTGAGTTGA | 1293 | 39.98 | MDSLTQSAVPPNKNRLARTFTKVLPSRKTKPREKAKLDKPITAVDPTKFFNDQNEKLKTKAFISKVFATISSVKAAYAQLQSAQSPYDAEGIQSADQIMVSELKALSEFKQSFLKKHLDDNAPGTTQLLAEIQEQKNMLQMYEITTKKMDSQKKLKDSEIIFLKEKLEEANKENKSIERRLNSSGPLASHEKLNFSSLSINNFLLALQQTTKSIKSLVKFMMSEMEAVNWDLVAAASSIQPDFVHWDEYNKCYAFESFFGQVMFDGFNNSSFTIMDKSESSQGQERFFDMYMELKSLKAREYIIWKPNSMFAKFCWFKYLKLIHPLLEYSLFGNLNQRNLVASENFPDTTFFSSFADMAKRVWLLHCLAFAFNPNKASVFQVRKGSRFSEVYMESVNEEEPQNTTPQVAFTVVPGFKLGKTVIQCQVYLS | 430 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04345 | 430 | Coils | Coil | 153 | 180 | - | - | |
| Lomi2g04345 | 430 | Pfam | Plant protein of unknown function (DUF641) | 58 | 180 | IPR006943 | - | |
| Lomi2g04345 | 430 | PANTHER | PROTEIN GRAVITROPIC IN THE LIGHT 1 | 53 | 430 | IPR040225 | GO:0009639(InterPro)|GO:0009959(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04345 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 122919 | Lomi2g04345 | Lomi3g00722 | |
| 122920 | Lomi2g04345 | Lomi4g02644 | |
| 122921 | Lomi2g04345 | Lomi4g02645 | |
| 122922 | Lomi2g04345 | Lomi5g02110 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr2:48818666 | Lomi4g02645 | Lomi-Chr4:33823602 | dispersed | |
| Lomi | Lomi-Chr2:48818666 | Lomi3g00722 | Lomi-Chr3:5930871 | wgd | |
| Lomi | Lomi-Chr2:48818666 | Lomi4g02644 | Lomi-Chr4:33823084 | wgd | |
| Lomi | Lomi-Chr2:48818666 | Lomi5g02110 | Lomi-Chr5:31800587 | wgd |