AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04345 ATGGATTCACTTACTCAATCGGCAGTCCCACCAAACAAAAACCGATTAGCTCGAACGTTTACTAAGGTGTTACCTAGTCGAAAAACGAAGCCACGCGAAAAGGCCAAACTCGACAAACCAATCACCGCCGTGGATCCAACTAAGTTCTTCAACGATCAAAATGAGAAGTTGAAAACTAAAGCGTTTATTTCCAAAGTGTTTGCCACCATTTCATCAGTGAAAGCTGCATATGCACAACTGCAATCTGCTCAATCTCCTTATGATGCTGAAGGGATTCAGTCAGCTGATCAGATCATGGTGTCTGAATTAAAAGCATTATCTGAGTTCAAACAGTCGTTCTTGAAGAAACATCTGGACGATAATGCCCCTGGAACCACTCAGCTGTTGGCTGAAATACAAGAACAAAAGAATATGTTACAAATGTATGAAATAACAACGAAAAAGATGGACAGTCAGAAAAAACTCAAAGATTCGGAGATCATTTTCTTGAAAGAGAAGTTGGAAGAGGCCAATAAAGAAAACAAGTCGATCGAAAGAAGGTTAAACTCGAGTGGGCCTTTAGCGTCTCACGAGAAGCTTAATTTCTCGTCTTTAAGTATAAACAATTTTCTCCTTGCTCTTCAACAAACGACGAAATCGATTAAAAGTTTAGTGAAGTTCATGATGAGTGAAATGGAAGCCGTGAATTGGGATTTAGTTGCAGCTGCTAGCTCAATCCAACCAGATTTTGTTCATTGGGACGAATATAATAAATGTTATGCATTCGAGTCATTCTTTGGTCAGGTGATGTTCGATGGTTTCAACAACTCGAGTTTTACGATCATGGATAAGTCCGAGTCATCTCAAGGCCAAGAACGGTTTTTCGACATGTATATGGAGCTAAAATCTTTAAAAGCGAGAGAATACATCATATGGAAACCAAACTCCATGTTTGCGAAATTTTGTTGGTTTAAGTATTTGAAACTCATACACCCGTTATTGGAATACTCTCTTTTCGGTAATTTGAATCAACGGAACCTTGTGGCATCCGAAAACTTCCCAGACACAACTTTTTTCTCGTCGTTTGCTGACATGGCAAAACGCGTTTGGCTCCTACATTGTCTAGCATTCGCATTCAATCCCAACAAGGCATCGGTATTTCAAGTCCGAAAAGGGAGTCGGTTTTCTGAAGTGTATATGGAAAGCGTAAATGAAGAAGAACCTCAGAACACGACGCCACAAGTGGCGTTTACGGTAGTTCCGGGGTTCAAGTTGGGTAAAACAGTTATTCAGTGTCAAGTATATTTGAGTTGA 1293 39.98 MDSLTQSAVPPNKNRLARTFTKVLPSRKTKPREKAKLDKPITAVDPTKFFNDQNEKLKTKAFISKVFATISSVKAAYAQLQSAQSPYDAEGIQSADQIMVSELKALSEFKQSFLKKHLDDNAPGTTQLLAEIQEQKNMLQMYEITTKKMDSQKKLKDSEIIFLKEKLEEANKENKSIERRLNSSGPLASHEKLNFSSLSINNFLLALQQTTKSIKSLVKFMMSEMEAVNWDLVAAASSIQPDFVHWDEYNKCYAFESFFGQVMFDGFNNSSFTIMDKSESSQGQERFFDMYMELKSLKAREYIIWKPNSMFAKFCWFKYLKLIHPLLEYSLFGNLNQRNLVASENFPDTTFFSSFADMAKRVWLLHCLAFAFNPNKASVFQVRKGSRFSEVYMESVNEEEPQNTTPQVAFTVVPGFKLGKTVIQCQVYLS 430
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04345 430 Coils Coil 153 180 - -
Lomi2g04345 430 Pfam Plant protein of unknown function (DUF641) 58 180 IPR006943 -
Lomi2g04345 430 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 53 430 IPR040225 GO:0009639(InterPro)|GO:0009959(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04345 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
122919 Lomi2g04345 Lomi3g00722
122920 Lomi2g04345 Lomi4g02644
122921 Lomi2g04345 Lomi4g02645
122922 Lomi2g04345 Lomi5g02110
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:48818666 Lomi4g02645 Lomi-Chr4:33823602 dispersed
Lomi Lomi-Chr2:48818666 Lomi3g00722 Lomi-Chr3:5930871 wgd
Lomi Lomi-Chr2:48818666 Lomi4g02644 Lomi-Chr4:33823084 wgd
Lomi Lomi-Chr2:48818666 Lomi5g02110 Lomi-Chr5:31800587 wgd